PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG414200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HSF
Protein Properties Length: 317aa    MW: 35116.2 Da    PI: 6.4476
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG414200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.55.7e-35371292103
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k++++++d+++++++sw e+g +fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fkkg +
  Pavir.9KG414200.1.p  37 FLTKTFQLVDDPRTDHVVSWGEDGATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADR---------WEFANEFFKKGAR 117
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkkse 103
                          +ll++i+r+k +
  Pavir.9KG414200.1.p 118 HLLSEIHRRKPS 129
                          *********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-3727120IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.71E-3433126IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.0E-5833126IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-203760IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.8E-3137126IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-207587IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434076100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-2088100IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MAFLVERCRG GGGEMAAASM DVEMSSHAAK PVAPAPFLTK TFQLVDDPRT DHVVSWGEDG  60
ATFVVWRPPE FARDLLPNYF KHNNFSSFVR QLNTYGFRKI VADRWEFANE FFKKGARHLL  120
SEIHRRKPSS CCSQPPPPLQ PLPPPHQPYL RSLFSPPQPH PPPPAYYRVQ EEDHGGGKED  180
FLATLSEDNR ELRRRNSLLL SELAHMRRLY NDIIYFLQNH VEPAPPPPPS ATGCRLVELG  240
SADNASPPTT TRRPRGDGEE APVKLFGVRL NDGKKRKAQA AVLLEEENGD GGHCDGVGDG  300
DGDHNGHDGD DQGSET*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-23121264129Heat shock factor protein 1
5d5v_B3e-23121264129Heat shock factor protein 1
5d5v_D3e-23121264129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG414200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432490.0AC243249.1 Panicum virgatum clone PV_ABa094-D05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797236.11e-157heat stress transcription factor B-4d-like
SwissprotQ10KX81e-105HFB4D_ORYSJ; Heat stress transcription factor B-4d
TrEMBLA0A2S3IQD91e-156A0A2S3IQD9_9POAL; Uncharacterized protein
STRINGPavir.Ib01755.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.12e-59heat shock transcription factor B4