PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9KG429900.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 234aa MW: 24451.5 Da PI: 9.3616

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9KG429900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	24.3	6.8e-08	42	76	12	46
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 12 kNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 +NRe+ArrsR R + ++ L+ ++ L eN + Pavir.9KG429900.1.p 42 SNRESARRSRMRNQRHLDDLTAQAAHLRRENAHVA 76 8******************************8655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.9E-4	34	95	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.81E-7	40	83	No hit	No description
CDD	cd14702	1.94E-13	41	84	No hit	No description
Gene3D	G3DSA:1.20.5.170	7.5E-6	41	75	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MASSSGSGSG SSGSLSATLA AAAGTEEELR AHGAALRQAD LSNRESARRS RMRNQRHLDD 60 LTAQAAHLRR ENAHVATALG LTTHGLLAVD AKNAIFRTQA AELAARLASL NDILACMNTN 120 AAAVAAARAA PVLCAGPCRL PLCGPCVCGA PREIRPHAAP SSPPWPEPAP GPCAMACREG 180 RRAQGGRPRR EGRRGGQRRE QEGEADSFIG NGWPLFPGTW AFNLEAHAKW ESK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9KG429900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT067356	1e-108	BT067356.2 Zea mays full-length cDNA clone ZM_BFc0022C11 mRNA, complete cds.
GenBank	BT085301	1e-108	BT085301.2 Zea mays full-length cDNA clone ZM_BFb0368K21 mRNA, complete cds.
GenBank	BT085353	1e-108	BT085353.2 Zea mays full-length cDNA clone ZM_BFc0002B07 mRNA, complete cds.
GenBank	HQ858796	1e-108	HQ858796.1 Zea mays clone UT1860 bZIP transcription factor mRNA, partial cds.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4459	33	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75390.1	5e-21	basic leucine-zipper 44

Link Out ? help Back to Top
Phytozome	Pavir.9KG429900.1.p