PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG430200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 229aa    MW: 24527.3 Da    PI: 8.2235
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG430200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.99.4e-1789138255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          +ykGVr+++ +g+W+AeIrdp+    +  +++lg+f +ae  a a++aa++ ++g
  Pavir.9KG430200.1.p  89 QYKGVRRRP-WGKWAAEIRDPV----KgVHVWLGTFSSAEASAVAYDAAARDIRG 138
                          69*******.**********75....44***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.21E-1888145No hitNo description
SMARTSM003804.8E-3289152IPR001471AP2/ERF domain
PfamPF008471.0E-989138IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-2989147IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-2089146IPR016177DNA-binding domain
PROSITE profilePS5103222.70889146IPR001471AP2/ERF domain
PRINTSPR003672.5E-1290101IPR001471AP2/ERF domain
PRINTSPR003672.5E-12128148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MCGGAILAEL ISSKPARRVT PGHLWPAAKQ QRADDFEAAF REFDGDSNEV QSKPLGFNAS  60
SAGTATRKLR RQQELLAAPA PSRRRKAAQY KGVRRRPWGK WAAEIRDPVK GVHVWLGTFS  120
SAEASAVAYD AAARDIRGPR AKLNFPSPAD AAPAAGRKRA RAAEFVDLVA DEEDGQQRCA  180
ASGVKHESET SESGGALPDF SWQVVSAYDE APAPVAVEAE DQSPLTEF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-2086146263ATERF1
3gcc_A7e-2086146263ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18395RRKAAQYKGVRRR
2155161GRKRARA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.4360.0callus| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG430200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3640867e-65AK364086.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2021I23.
GenBankBT0685517e-65BT068551.1 Zea mays full-length cDNA clone ZM_BFb0310P02 mRNA, complete cds.
GenBankEU9557157e-65EU955715.1 Zea mays clone 1543173 ethylene-responsive element binding protein 2 mRNA, complete cds.
GenBankEU9559817e-65EU955981.1 Zea mays clone 1554709 ethylene-responsive element binding protein 2 mRNA, complete cds.
GenBankKJ7276127e-65KJ727612.1 Zea mays clone pUT5520 AP2-EREBP transcription factor (EREB182) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797880.11e-94ethylene-responsive transcription factor ERF073-like
TrEMBLA0A3L6TPM03e-95A0A3L6TPM0_PANMI; Uncharacterized protein
STRINGPavir.Ia04158.1.p1e-122(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43712654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.21e-25ERF family protein