PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG433300.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 337aa    MW: 34390.5 Da    PI: 6.7859
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG433300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.25.9e-27123183259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dg+ WrKYGqKe+++s++prsYYrCt++   gC++k++v+rs+ dp+  ++tY geH+++
  Pavir.9KG433300.2.p 123 EDGHVWRKYGQKEIQNSPYPRSYYRCTHSssqGCNAKRQVQRSEADPSKHVVTYYGEHTCR 183
                          8**************************998889*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-27116185IPR003657WRKY domain
PROSITE profilePS5081125.43117185IPR003657WRKY domain
SuperFamilySSF1182901.11E-25120185IPR003657WRKY domain
SMARTSM007745.3E-36122184IPR003657WRKY domain
PfamPF031064.4E-25123183IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MASSGGDVPA ERAAAAANDL VEARDGAASL RTFLLELDDQ RAPWAQRVVD AVLSRLSSAM  60
SALDVGGAAT GGGRSPATGS GSGGASRPQQ SVSYSSRNTK DKKRSLSRRS QRPSDKKITT  120
TLEDGHVWRK YGQKEIQNSP YPRSYYRCTH SSSQGCNAKR QVQRSEADPS KHVVTYYGEH  180
TCRDPSTIPL VVHAAGAAPD DRANNLISFG HSGASDSSAA ATGAYSSSQY LAMGGRSTAG  240
DQLSTSWCTS DDMFSSSAGS FMQVDELISA VVGSAGVTST ATAGSAALDR GGLGGMAGGG  300
GGNASFPPSP NGLAGFVVGS LGSIGGDDDD LFSMDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-25118183469OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG433300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796867.10.0WRKY transcription factor 55-like
TrEMBLA0A2T7CD130.0A0A2T7CD13_9POAL; Uncharacterized protein
STRINGPavir.Ib01568.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-24WRKY DNA-binding protein 70