PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG468600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Dof
Protein Properties Length: 365aa    MW: 36050.2 Da    PI: 8.4032
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG468600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.82.7e-3949109262
               zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                          +e+ l+cprCds ntkfCyynnyslsqPr+fCk+CrryWtkGGalrnvPvGgg+rknk+s+
  Pavir.9KG468600.1.p  49 PEQGLRCPRCDSPNTKFCYYNNYSLSQPRHFCKTCRRYWTKGGALRNVPVGGGCRKNKRSR 109
                          67899*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027017.7E-3351107IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.60953107IPR003851Zinc finger, Dof-type
ProDomPD0074782.0E-2653106IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105591IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010052Biological Processguard cell differentiation
GO:0010118Biological Processstomatal movement
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1902066Biological Processregulation of cell wall pectin metabolic process
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MASSTGVAAG DDAVGARKGG AGGGGGTVAP PPAAGAQHQH QQQQPPPPPE QGLRCPRCDS  60
PNTKFCYYNN YSLSQPRHFC KTCRRYWTKG GALRNVPVGG GCRKNKRSRS AAAAAAAAAA  120
ASSRLSLNLP VEGVGGDQQV AASAARLGFL GAGAAPVASS PIGGAPAADY QQAAGAVGMM  180
ALPRLQAVGQ YVPFGEWPAG AGGDVPGGGG GAHGGAVSSS IASSIESLSF INQDLHWKLQ  240
QQRLATMFLG PPPPPPTSSA AHVDGAPASA AHIGGAFLHM AGPPPGMEST IMPAATSWFM  300
DSSSYGVGVL PSPTAHANNT AAAAAACNVV VSSGRSSGGD DDSGTNCGSA IPSWGDMSTF  360
AMLP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.200622e-48stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG468600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC5824021e-109KC582402.1 Sorghum bicolor dof5 protein (dof5) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796800.11e-155dof zinc finger protein DOF5.7-like
TrEMBLA0A2S3IKF71e-154A0A2S3IKF7_9POAL; Uncharacterized protein
STRINGPavir.Ib03857.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.14e-32TARGET OF MONOPTEROS 6