PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG475700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 190aa    MW: 21016.1 Da    PI: 11.3695
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG475700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix36.71.1e-111594281
             trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81
                         W++ e+ +Li+a    ++r r + l  ++W++ ++++      + r f+r+ +qC+ +++ l+kryk++ +++ +      s +p+
  Pavir.9KG475700.1.p 15 WSDGETSTLIDAWGAAHQRRRPRGLHLKDWRAAASAVnthraaAGRRFNRTRVQCQTRIRTLKKRYKEELARQPS------SGWPH 94
                         *****************************************999999********************99877765......34555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-171498No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MPSRKLAPES ASGNWSDGET STLIDAWGAA HQRRRPRGLH LKDWRAAASA VNTHRAAAGR  60
RFNRTRVQCQ TRIRTLKKRY KEELARQPSS GWPHLSRLPP PGFPARAPVP VKREVKAEEG  120
GCSGVAASWT VPRRPRDAAT RSTGFCPSAV VTKLAEVYER VELARIGAEK EKMEMEVQQA  180
MLDAVKVKQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG475700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792102.16e-97uncharacterized protein LOC112873338
TrEMBLA0A2S3ISL92e-99A0A2S3ISL9_9POAL; Uncharacterized protein
STRINGPavir.Ib01370.1.p1e-115(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147531213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.11e-11sequence-specific DNA binding transcription factors