PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG479800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family LBD
Protein Properties Length: 234aa    MW: 24715.8 Da    PI: 6.9724
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG479800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.19.5e-41601591100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk+lrr+Ca++Cvlapyfp ++p+kf  +h++FGasn++kll++lpe+ r da+ss+vyeAear+rdPvyG++g + +lq+q ++l
  Pavir.9KG479800.1.p  60 PCAACKILRRRCADGCVLAPYFPPTEPAKFTTAHRVFGASNIIKLLQDLPESARADAVSSMVYEAEARLRDPVYGCAGAVCRLQKQANEL 149
                          7***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          k++la++++ 
  Pavir.9KG479800.1.p 150 KVQLARAQAD 159
                          *****99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.36959160IPR004883Lateral organ boundaries, LOB
PfamPF031957.6E-4160157IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MDYGSGSTGT GNTMAPPPQQ YSSCSSVSPP SRVSSCSPPP APHAAQVVVG NAPPTVVLSP  60
CAACKILRRR CADGCVLAPY FPPTEPAKFT TAHRVFGASN IIKLLQDLPE SARADAVSSM  120
VYEAEARLRD PVYGCAGAVC RLQKQANELK VQLARAQADL LNAQAQHANL LALVCVEMAN  180
RRDSHQNQHQ HPSPPLMDGG GGGHFVGAAA YHAFYDSDLD SATWPDHEAQ LWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-415916210113LOB family transfactor Ramosa2.1
5ly0_B6e-415916210113LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG479800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9539371e-172EU953937.1 Zea mays clone 1449845 LOB domain protein 11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004987050.21e-117LOB domain-containing protein 1
SwissprotQ9LQR04e-63LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A2T7CE111e-118A0A2T7CE11_9POAL; Uncharacterized protein
STRINGPavir.Ib01336.1.p1e-172(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26453790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.16e-55LOB domain-containing protein 1