PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9KG508600.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Trihelix

Protein Properties

Length: 452aa MW: 48894.4 Da PI: 7.2863

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9KG508600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	82.8	4.7e-26	49	117	2	70
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 W ++e+l+Li++rrem+ +++++k++k+lWe++s++mr++gf rsp++C++kw+nl k++kk + +++ Pavir.9KG508600.1.p 49 WVRDETLCLIALRREMDAHFNTSKSNKHLWEAISARMRDQGFDRSPTMCTDKWRNLLKEFKKARSHARH 117 ***************************************************************999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	8.316	41	105	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	4.7E-4	42	107	IPR009057	Homeodomain-like
SMART	SM00717	3.7E-5	45	107	IPR001005	SANT/Myb domain
CDD	cd12203	9.79E-28	47	112	No hit	No description
Pfam	PF13837	1.2E-17	48	142	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence Send to blast
MLLSGPPAAP TPPLLLPESS GEDGGHDSSS RAAAAAAAGS APKRRAETWV RDETLCLIAL 60 RREMDAHFNT SKSNKHLWEA ISARMRDQGF DRSPTMCTDK WRNLLKEFKK ARSHARHNAG 120 GGGGGAGGSG NAKMAYYKEI DDLLKRRGKE SGSGGCVASG SGAGKSPTSN SKIESYLQFT 180 TDNGFEDANI PFGPVEANGR SILSIDDRLE DVRHPLPLTA ADAVATNGVN PWNWRDTSTN 240 EAASQVDEGA LGEGLLPPAD LAAGSSSLAI ITNLGPGSAR SRHFLELSTK RRVPDFARSG 300 QHTARSSGGG DNQGTFGGRV ILVKWGDYTK RIGIDGTPEA IKEAIKSAFG LRTRRAFWLE 360 DEDEVVRTLD RDMPIGAYTL HLDDGVTIKL CNANRMQTPE DKTFYTEEDF RDFLARRGWT 420 FLREYGGYRN VESLDDLRRG AIYQGMRSLG D*

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence Send to blast

MLLSGPPAAP TPPLLLPESS GEDGGHDSSS RAAAAAAAGS APKRRAETWV RDETLCLIAL  60
RREMDAHFNT SKSNKHLWEA ISARMRDQGF DRSPTMCTDK WRNLLKEFKK ARSHARHNAG  120
GGGGGAGGSG NAKMAYYKEI DDLLKRRGKE SGSGGCVASG SGAGKSPTSN SKIESYLQFT  180
TDNGFEDANI PFGPVEANGR SILSIDDRLE DVRHPLPLTA ADAVATNGVN PWNWRDTSTN  240
EAASQVDEGA LGEGLLPPAD LAAGSSSLAI ITNLGPGSAR SRHFLELSTK RRVPDFARSG  300
QHTARSSGGG DNQGTFGGRV ILVKWGDYTK RIGIDGTPEA IKEAIKSAFG LRTRRAFWLE  360
DEDEVVRTLD RDMPIGAYTL HLDDGVTIKL CNANRMQTPE DKTFYTEEDF RDFLARRGWT  420
FLREYGGYRN VESLDDLRRG AIYQGMRSLG D*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	2e-38	43	139	1	86	DNA binding protein GT-1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.1811	0.0	callus\| leaf\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9KG508600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT055522	0.0	BT055522.1 Zea mays full-length cDNA clone ZM_BFc0047D18 mRNA, complete cds.
GenBank	KJ727951	0.0	KJ727951.1 Zea mays clone pUT6049 trihelix transcription factor (THX25) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025794722.1	0.0	trihelix transcription factor GT-4-like isoform X1
Swissprot	Q9FX53	3e-70	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A3L6S8N5	0.0	A0A3L6S8N5_PANMI; Trihelix transcription factor
STRING	Pavir.Ib01088.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5631	37	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.3	8e-62	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Pavir.9KG508600.1.p

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]