PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG512700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 247aa    MW: 25101.4 Da    PI: 5.6134
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG512700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.8e-183584255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          ykGVr ++ +g+Wv+e+r p   ++++r++lg++ t+e Aa+a++aa ++l+g
  Pavir.9KG512700.1.p 35 PYKGVRMRS-WGSWVSEVRAP---NQKRRIWLGSYATPEAAARAYDAALLCLKG 84
                         59****998.*******9998...336************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.4E-313598IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-283593IPR001471AP2/ERF domain
PROSITE profilePS5103221.4563592IPR001471AP2/ERF domain
PRINTSPR003675.6E-83647IPR001471AP2/ERF domain
CDDcd000182.81E-163691No hitNo description
PfamPF008471.7E-113684IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-183693IPR016177DNA-binding domain
PRINTSPR003675.6E-85874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MVKNTSNGVA TAAAFSDDNK ARPESGVGGK SAARPYKGVR MRSWGSWVSE VRAPNQKRRI  60
WLGSYATPEA AARAYDAALL CLKGSGAVLN FPAAASSPSS SSSSSPHHVD TRHSDPASSS  120
GAMSPRSIQR AAAAAAAAFD AGLGATSVDD RCSSSAGATT PTSAASASLS VSTLCSADHV  180
QEHTTTSSSA AASTGSPAEG DELWTDLDAF ASPKFMDLMA AGAAPFSSAW EDPEDDGEVM  240
RLWSFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-122692772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG512700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276602e-93KJ727660.1 Zea mays clone pUT5587 AP2-EREBP transcription factor (EREB173) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795709.11e-125ethylene-responsive transcription factor ERF014-like
TrEMBLA0A3L6TSU01e-128A0A3L6TSU0_PANMI; Uncharacterized protein
STRINGPavir.Ib01111.1.p1e-170(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108303040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.14e-22ERF family protein