PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG530200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 244aa    MW: 26212.7 Da    PI: 7.1665
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG530200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.42.1e-152267147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         + +WT+eEd  l + v+ +G+ +W++I++ ++ gR +k+c++rw ++
  Pavir.9KG530200.1.p 22 KSAWTKEEDAALREQVRAHGPQNWAAISAALP-GRNPKSCRLRWWQH 67
                         579*****************************.***********766 PP
2Myb_DNA-binding513.2e-1677119347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          ++T+eEd+++++++++++++ W+tIa  ++ gR+++ +k+rw+++
  Pavir.9KG530200.1.p  77 PFTPEEDDKIACLHRLYPNK-WATIAGFLP-GRSDNAVKNRWNSV 119
                          79******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.641772IPR017930Myb domain
SuperFamilySSF466891.84E-2920116IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-182070IPR009057Homeodomain-like
SMARTSM007176.2E-162170IPR001005SANT/Myb domain
PfamPF002492.3E-142267IPR001005SANT/Myb domain
CDDcd001676.22E-152468No hitNo description
SMARTSM007177.1E-1374122IPR001005SANT/Myb domain
PROSITE profilePS5129415.50776124IPR017930Myb domain
PfamPF002498.3E-1577120IPR001005SANT/Myb domain
CDDcd001672.96E-1277120No hitNo description
Gene3DG3DSA:1.10.10.603.1E-1877120IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MAMQDDEAAA EAGGVHPVAM KKSAWTKEED AALREQVRAH GPQNWAAISA ALPGRNPKSC  60
RLRWWQHLTP AVDAVRPFTP EEDDKIACLH RLYPNKWATI AGFLPGRSDN AVKNRWNSVL  120
GKHPQPQHQQ WALAAPLRRV SDGTLPLFPL ASGDVRACGR SARVLRHPPP GDVAGDDLSG  180
ACLELFPLAP GDLAGANGTS EEAEMDVDRS DDDPTAAGLR LWPCTRAASM AAFKAMVQAV  240
RAP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3zqc_A3e-27221222101MYB3
3zqc_D3e-27221222101MYB3
3zqc_G3e-27221222101MYB3
3zqc_J3e-27221222101MYB3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG530200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798530.11e-139myb-related protein 308-like
TrEMBLA0A3L6SC901e-144A0A3L6SC90_PANMI; Uncharacterized protein
STRINGPavir.Ib00896.1.p1e-176(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49603465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.12e-34myb domain protein 77