PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG536500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 262aa    MW: 29142.8 Da    PI: 6.3089
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG536500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.1e-12101149355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++iN+++  L++l+P +    +k   Ka++L + ++Y++sLq
  Pavir.9KG536500.1.p 101 NSHSLAERFRREKINERMKLLQDLVPGC----NKITGKAMMLDEIINYVQSLQ 149
                          58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.51E-1896164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.03E-1196153No hitNo description
PROSITE profilePS5088815.79698148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-1898165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-9101149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-10104154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MDFDEPIVFP MNNVGVQEGI QLYNSAGDTQ LSRNMNTGKC LKGGKRKGSG EDSSSLHSID  60
ETGALLQREV SMECPDEKPG DAGTNREDYV HVRAKRGQAT NSHSLAERFR REKINERMKL  120
LQDLVPGCNK ITGKAMMLDE IINYVQSLQR QVEFLSMKLS AISPELNRDL DLRDILCTQD  180
AHAAFPGYSP QISSLHLNLF RASQQGFSHP QPYGMTPNPS NVHVARPVPQ LLQLPAFPQR  240
GVVWDEEHRT IAPDAFTSDI Q*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.424770.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG536500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0622160.0BT062216.1 Zea mays full-length cDNA clone ZM_BFb0227P23 mRNA, complete cds.
GenBankKJ7267920.0KJ726792.1 Zea mays clone pUT2278 bHLH transcription factor (bHLH3) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796812.10.0transcription factor bHLH76-like isoform X4
SwissprotQ6NKN94e-44BH074_ARATH; Transcription factor bHLH74
TrEMBLA0A2T7CFE40.0A0A2T7CFE4_9POAL; Uncharacterized protein
STRINGPavir.Ib00947.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45362933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.12e-46bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]