PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG561300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 737aa    MW: 78053.6 Da    PI: 6.15
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG561300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.73.6e-2976160187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW++qe+laL+++r+em+ ++r+++lk+plW+++s+++++ g++rs+k+C+ek+en+ k+yk++k+g+ +r  ++ + +++f++lea
  Pavir.9KG561300.1.p  76 RWPRQETLALLKIRSEMDAAFREAALKGPLWDQISRRLEAMGYKRSAKKCREKFENVDKYYKRTKDGRAGR--GDGKAYRFFSELEA 160
                          8********************************************************************97..66667******985 PP
2trihelix107.87.1e-34445530187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW+k ev+aLi++r+e+e+r++++  k+plWe++s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpy++ql+a
  Pavir.9KG561300.1.p 445 RWPKAEVHALIQLRTELETRYQDSGPKGPLWEDISAGMRRLGYSRSSKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYYHQLDA 530
                          8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.92269133IPR017877Myb-like domain
SMARTSM007170.001873135IPR001005SANT/Myb domain
CDDcd122031.97E-2775140No hitNo description
PfamPF138375.5E-2075161No hitNo description
PROSITE profilePS500907.561438502IPR017877Myb-like domain
SMARTSM007170.0048442504IPR001005SANT/Myb domain
CDDcd122031.24E-30444509No hitNo description
PfamPF138371.9E-23445531No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 737 aa     Download sequence    Send to blast
MQQPGMPPFF GTPVGVAQNA ATPAPAPEGQ QQQQQQQVDA SGTASAAAAG DHEAAAGMSM  60
SAGGDEGDRG GPSGNRWPRQ ETLALLKIRS EMDAAFREAA LKGPLWDQIS RRLEAMGYKR  120
SAKKCREKFE NVDKYYKRTK DGRAGRGDGK AYRFFSELEA LHGASSSPAS SLAPTPVAMA  180
PPPTPLPVLP APAMHAEPPP RVAAVPQPAP PMSGTTAAPA AAASGAACMM TTPGDVMSFS  240
SGSDGEDTED TGDGGKRKRH GGDDVGGSSK MMRFFEGLMR QVMERQEEMQ QRFIEAIEKR  300
EQDRMIREEA WRRQEVARLA REQDALAQER AMAASRDAAV VSFIQRVTGQ TIPMPSVAPP  360
ALFMTHPPPL QPTPVASAAP APAPAQHQQR PSIIQLSPKA MPPKLAQPQP QHQTPPPAQP  420
QSKEMIVRAP AAESQDTTPS PSPSRWPKAE VHALIQLRTE LETRYQDSGP KGPLWEDISA  480
GMRRLGYSRS SKRCKEKWEN INKYFKKVKE SNKKRPEDSK TCPYYHQLDA LYRSKALASS  540
SGAGVAAEAA PPRPAHHQAA GGGVTVLAAV PLSQTAPHSH GGKQDCSNGN GNGCAGRGSS  600
SDSGGSSVQG AGGGNGVASN NKLLQEEEEE EGITITKETA ATEPRPPPQP VSMNDSYVND  660
TVDSDSSMDD DDDDEDDEFD DGGEGNDVVG GNSKMQYEIQ FQRPQQGQNA SGGGAGSSGP  720
GPAAATSGSF LTMVHH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG561300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9516591e-129EU951659.1 Zea mays clone 988816 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791925.10.0trihelix transcription factor GTL1-like
TrEMBLA0A2T7CIN40.0A0A2T7CIN4_9POAL; Uncharacterized protein
STRINGPavir.Ib00103.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.15e-49Trihelix family protein