PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG568800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 208aa    MW: 21965.3 Da    PI: 4.6188
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG568800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.81.7e-152574155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         + y+G+r++   g+Wv+eIr+p   gk++r++lg++  +e+Aa+a++aa+ +l+g
  Pavir.9KG568800.1.p 25 PVYRGIRYRG--GKWVSEIREP---GKSTRIWLGTYPAPEMAAAAYDAAAWALRG 74
                         68*****975..*********8...557**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.1E-102574IPR001471AP2/ERF domain
SMARTSM003801.7E-222688IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-252682IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-172682IPR016177DNA-binding domain
PROSITE profilePS5103219.2032682IPR001471AP2/ERF domain
PRINTSPR003677.1E-62738IPR001471AP2/ERF domain
CDDcd000182.41E-142782No hitNo description
PRINTSPR003677.1E-66484IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MSGEMEQEQD APLPLRRVRA DTRHPVYRGI RYRGGKWVSE IREPGKSTRI WLGTYPAPEM  60
AAAAYDAAAW ALRGAEAALN FPGAAASRPA PASCSSDDIR AAAAAAAAMA GRRPGDGECV  120
ASHSYLPQAA AAASTSGSEA ANNNASAWEG ERRIVDEDDV FQMPRLLEGM AEGLMMSPPR  180
LSPTADGAWA LEEPDDHDGG MSLWDHS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG568800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432322e-77AC243232.2 Panicum virgatum clone PV_ABa011-K10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797835.15e-82ethylene-responsive transcription factor ERF027-like
TrEMBLK4AK414e-89K4AK41_SETIT; Uncharacterized protein
STRINGPavir.Ib00031.1.p1e-118(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.13e-19ERF family protein