PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG588800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 601aa    MW: 64140.4 Da    PI: 7.9286
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG588800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.5e-05489514123
                          EEET..TTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                          ++C+  +C ++F++k +L +H ++ +
  Pavir.9KG588800.1.p 489 FECNidYCQMTFKTKAELSVHKKNmC 514
                          89*******************99866 PP
2zf-C2H213.40.00024572596123
                          EEET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                          ykC+   C+k F+  s+++rH r++
  Pavir.9KG588800.1.p 572 YKCTmpGCNKIFKFVSDFTRHRRRC 596
                          99*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035517489511IPR015880Zinc finger, C2H2-like
SMARTSM003553.4512536IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.219512541IPR007087Zinc finger, C2H2
PROSITE patternPS000280514536IPR007087Zinc finger, C2H2
SuperFamilySSF576672.19E-14523576No hitNo description
Gene3DG3DSA:3.30.160.601.2E-10529562IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.676542571IPR007087Zinc finger, C2H2
SMARTSM003550.0017542566IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280544566IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.7E-9563594IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.1E-5568595No hitNo description
SMARTSM0035512572594IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.995572600IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
ARLLSSPSLS PTANAAPSSP PPPPAASWLH AAAEDCCAFC ELSRPAPQEG SDAIKHKGHI  60
ASRVPESDVG GDERVRQAQQ PPAPEVKKCK ADHGFNVNKT SVELQAPRAA SGVSEAVVKP  120
EVAGGATLVN EADAEPAAKP GNFIVDAAAI GQEVNCRFSL VNDATKPEVT GGDSLLNGST  180
TGLEVLEDAP LANEAAHDPE VTEKVSPESK VATVPVVTSV AAEVTGVPSR MNKSGIILEV  240
IRRTSSGKAV TDPGVATTML RTGSLSTEGA DRPKVTGVAS FMQETTKLES VGEDYVASKA  300
AAEPEDSGRV SSNVDDTATL DKPQLPSCNP NIGNVQLRNA GETVASAMQP SGCDAAKVHS  360
FVNSTSNGPV GAKGPTVEGG LLNDGFVKPS VSCAYDIVAR SIGTSGRSDV ICYARRRGKR  420
KLELLEVKTE NIELEDGVIC EEETLGRTGR CESVLSTAGS VDVKLADIKK ELMDNSAASK  480
VKKTKRNRFE CNIDYCQMTF KTKAELSVHK KNMCTVKSCS RHFRSHRYLR RHQSVHNDDM  540
PYKCPWDGCG MAFKWSWDRA EHFKVHAGVK PYKCTMPGCN KIFKFVSDFT RHRRRCKPQR  600
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A7e-4048959523129Lysine-specific demethylase REF6
6a58_A7e-4048959523129Lysine-specific demethylase REF6
6a59_A7e-4048959523129Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1414420RRRGKRK
2414421RRRGKRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.220380.0callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG588800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792345.10.0uncharacterized protein LOC112873563
TrEMBLA0A3L6SAH40.0A0A3L6SAH4_PANMI; Zinc finger protein GLI1-like isoform X2
STRINGPavir.J38242.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114913241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.12e-40relative of early flowering 6