PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG592900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family E2F/DP
Protein Properties Length: 383aa    MW: 40786.2 Da    PI: 5.651
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG592900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP85.44.3e-27125211371
              E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse.....................dvknkrRRiYDilNVLealnliekkekneirwk 70 
                          +++Lr++++k   ++ek+e+ g++t+neva+eLv+e                     d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wk
  Pavir.9KG592900.1.p 125 NRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEftdpnnnieapdpdnpnaqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWK 210
                          689*******...*****999************************************************************.*******9 PP

              E2F_TDP  71 g 71 
                          g
  Pavir.9KG592900.1.p 211 G 211
                          8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094042.8E-12723382IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.105.2E-45119217IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.8E-38123211IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467854.9E-20126212IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023195.0E-25126211IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd144583.36E-43216319IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440746.8E-42218333No hitNo description
SMARTSM011386.3E-79218380IPR014889Transcription factor DP, C-terminal
PfamPF087815.4E-41219352IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MVSGVADNPD GDGGAQRPPP PVGAGAALGT PPVSAGAAHS ASTSGGSAGS PSSRSEQHAP  60
DGAGKGAAPG AAAAASASAS TPASESTFLR LNNLDINGDD APSSLAPTSK KKKRGARAVG  120
PDKGNRGLRQ FSMKVCEKVE SKGRTTYNEV ADELVAEFTD PNNNIEAPDP DNPNAQQYDE  180
KNIRRRVYDA LNVLMAMDII SKDKKEIQWK GLPRTSISDI EELKTELVGL KGRIEKKSSY  240
LQELQDQYVG LQNLIQRNEQ LYGSGNTPSG GVALPFILVQ TRPHATVEVE ISEDMQLVHF  300
DFNSTPFELH DDSYVLKEML FCGREQHDST QEPISNGGES SSMSNIYWEQ VQHAGRPNNG  360
TVRLPGSPPI PGILKGRVKH EH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B4e-35117216193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.305570.0leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG592900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0659570.0BT065957.1 Zea mays full-length cDNA clone ZM_BFb0087C01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798097.10.0transcription factor-like protein DPB isoform X1
SwissprotQ9FNY21e-138DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A2S3IU500.0A0A2S3IU50_9POAL; Uncharacterized protein
TrEMBLA0A2T7CHM70.0A0A2T7CHM7_9POAL; Uncharacterized protein
STRINGPavir.Ib00301.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-135Transcription factor DP