PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG599500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HSF
Protein Properties Length: 381aa    MW: 42389.7 Da    PI: 5.585
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG599500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.61.6e-32491392101
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+++++ d+++++++sw ++gnsfvv+d++ fa  +Lp++Fkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g++
  Pavir.9KG599500.1.p  49 FLTKTFDLVADPATDQVVSWGRTGNSFVVWDPHVFAAVLLPRFFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFANEGFLRGQR 129
                          9****************************************************************999.........************* PP

                          XXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkk 101
                          +ll+ ikr++
  Pavir.9KG599500.1.p 130 QLLRLIKRRR 139
                          ********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.6E-5945138IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.04E-3445138IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.1E-3745138IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.4E-194972IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.8E-3049138IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-198799IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434088112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-19100112IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MDPLLPGVVT VKEEWPPSSP PPEEEVEDVD AAGAPRPMEG LHEVGPPPFL TKTFDLVADP  60
ATDQVVSWGR TGNSFVVWDP HVFAAVLLPR FFKHNNFSSF VRQLNTYGFR KIDPDRWEFA  120
NEGFLRGQRQ LLRLIKRRRP PSYLPGPQHQ QQAALGSCQE VGQFGGGLGE EMDRLRRDKS  180
ILVAEVVKLR QEQQSTRADM RAMEERLRHA EQKQVQMMGF LARALQNPDF FQQLAQQQER  240
RRELGGALSR KRRRPIGAAP VEEAPRPRQD DEDEPPLLFQ AGGGFEAEPG ASELEKLALN  300
IQGLGKRRQQ DDKQAPGGGG ETAELTDDFW EELLSEGMMG GGGAGATVPP ELETRRQRPG  360
RYVDALAQKL SSMSNNSAAK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-254713818120Heat shock factor protein 1
5d5u_B1e-254713827129Heat shock factor protein 1
5d5v_B1e-254713827129Heat shock factor protein 1
5d5v_D1e-254713827129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132137RLIKRR
2239253RRRELGGALSRKRRR
3249253RKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG599500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792158.10.0uncharacterized protein LOC112873415
SwissprotQ8H7Y61e-160HFA2D_ORYSJ; Heat stress transcription factor A-2d
TrEMBLA0A1E5WLF60.0A0A1E5WLF6_9POAL; Heat stress transcription factor A-2d
STRINGPavir.Ib00391.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-82heat shock transcription factor A6B