PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG603400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 567aa    MW: 60613.1 Da    PI: 6.3955
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG603400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.31.3e-083363731954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yp+ +e+  LA+++gL+  qV++WF N R +
  Pavir.9KG603400.1.p 336 FEHflHPYPKDSEKLMLARQTGLSRGQVSNWFINARVR 373
                          554459******************************88 PP
2BELL107.48.8e-35198269172
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          erq+lq+k + L+ ll++Vd++Y++y+ q+q+v+ssF+avag g+a+pYt+lAl++iSrhFr+L+dai  q+
  Pavir.9KG603400.1.p 198 ERQDLQNKVSALMALLDQVDRKYRHYRSQMQMVMSSFDAVAGAGAARPYTALALQTISRHFRSLRDAIGAQV 269
                          799*****************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.7E-46127267IPR006563POX domain
PfamPF075261.9E-46133265IPR006563POX domain
PROSITE profilePS5007112.001314377IPR001356Homeobox domain
SMARTSM003891.7E-9317381IPR001356Homeobox domain
CDDcd000863.66E-12317378No hitNo description
SuperFamilySSF466894.28E-17318384IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-27320383IPR009057Homeodomain-like
PfamPF059204.4E-17334373IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MATFFSASTD QRDLAGGGDM SFHHYTTTSN PYSDTPTGGL MPFPATIVSE GHVAHGGDGR  60
DEPSSGAEMS LQTQLLMASA SAAQHQGLSL SLGTQGVPVS LYQYRQAGMA AASLLSPGQT  120
TAAASRNAQS IYIQNSKYLK AARELLGEVV NVRDAIKRKS DKNQQSKDSG EGAKDAEKSE  180
EKADEHEGNS SAELTPSERQ DLQNKVSALM ALLDQVDRKY RHYRSQMQMV MSSFDAVAGA  240
GAARPYTALA LQTISRHFRS LRDAIGAQVQ SLRRSLGEKE GAAEGGGLSR LRYIDQQLRQ  300
QRAMQQFGMM QQPQHAWRPQ RGLPESAVSV LRAWLFEHFL HPYPKDSEKL MLARQTGLSR  360
GQVSNWFINA RVRLWKPMIE EMYKEEFGAE MDSHSSSENA GNKGKDEAAI SSEDHDEFQS  420
PSTAAKHGHL NAFKSEAIGG MDAGGGVGLS GLAGGANIGP YATSLNLGAV GHGSSSSSLL  480
QDALAHHHGD PRFVAYGDMG GLAGGGGYDG SSVSLTLGLQ HCNDAGAVPA EQQGLLYGNA  540
GDFEFINASE DRQRFGSSQL LHDFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5bng_A2e-17323381159Homeobox protein Meis2
5bng_B2e-17323381159Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.131750.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG603400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7284970.0KJ728497.1 Zea mays clone pUT6802 HB transcription factor (HB64) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797172.10.0BEL1-like homeodomain protein 7
TrEMBLA0A1E5W1C90.0A0A1E5W1C9_9POAL; BEL1-like homeodomain protein 7
STRINGPavir.Ia04290.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-105BEL1-like homeodomain 6