PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG613800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family AP2
Protein Properties Length: 533aa    MW: 57065.3 Da    PI: 8.3129
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG613800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.21.3e-15255314155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+++GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Pavir.9KG613800.1.p 255 SQFRGVTRHRWTGRYEAHLWDnTCRkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 314
                          789******************544454478446*************************98 PP
2AP246.41e-14359408355
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Pavir.9KG613800.1.p 359 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 408
                          9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.95E-20255324No hitNo description
SuperFamilySSF541711.96E-16255324IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-15256323IPR001471AP2/ERF domain
SMARTSM003801.5E-28256328IPR001471AP2/ERF domain
PROSITE profilePS5103218.742256322IPR001471AP2/ERF domain
PfamPF008472.2E-12256314IPR001471AP2/ERF domain
PRINTSPR003679.1E-6257268IPR001471AP2/ERF domain
CDDcd000181.71E-23357418No hitNo description
SuperFamilySSF541719.15E-18357418IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.4E-18358416IPR001471AP2/ERF domain
SMARTSM003802.9E-33358422IPR001471AP2/ERF domain
PROSITE profilePS5103219.203358416IPR001471AP2/ERF domain
PfamPF008471.4E-9359408IPR001471AP2/ERF domain
PRINTSPR003679.1E-6398418IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MDMNNGWLGF SLSPSAGTRG GYGDGGGGAS GSGDAEGSCS SPAAASPLVA MRLQSDGPLQ  60
YSSAPDWRHA AEAKGPKLED FMSVTCSNKS SSSSSRHYDS CNHEVHDLQP FSGGPYFHDH  120
GHGSSGGGIG LGINMNAPPC SGQLGSGFPD HHHHHQFLSH HGEYFLGTPS NPSPPPGGAM  180
PSMPVYSAGG GVVGGSMSIS GIKSWLREAM YVPPERSAAL SLSVTDVPAE PPQLLPPAPM  240
PVARKPAQTF GQRTSQFRGV TRHRWTGRYE AHLWDNTCRK EGQTRKGRQV YLGGYDMEEK  300
AARAYDLAAL KYWGPSTHIN FPLSHYEKEL EEMKHMSRQE FIAHLRRNSS GFSRGASMYR  360
GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD IAAIKFRGLN AVTNFDISKY  420
DVKRICASTR LIGNDAACRR SPTRPPDAPA ALPERPSSDT PGGGGGAAAA SDNSDTSDRH  480
RGAHLLHGLQ YSQHPMKFEA GEGSSWMSAA AARPAAGVHS VHQLPVFALW ND*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG613800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0557670.0BT055767.2 Zea mays full-length cDNA clone ZM_BFb0180B22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796834.10.0AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A3L6SCK60.0A0A3L6SCK6_PANMI; Uncharacterized protein
STRINGPavir.Ib00475.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-117AP2 family protein