PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG618400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 790aa    MW: 88504.8 Da    PI: 4.9756
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG618400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM64.92.5e-20701991128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 
                          lp+G++F+P+d +l+  +L+++v + +       +   +    v+++ +  +++P+d+p  v+++ +  yfF++r ++y+++  +n +  
  Pavir.9KG618400.1.p  70 LPRGVEFNPSDGDLL-WHLAAEVGNGQaerhpfiN---KfitsVVDDRGFSYTHPRDIP-GVRQDGHASYFFHRRFESYSNEGDENII-- 152
                          699************.7899999988866655541...13333688889**********.667788899**********998888775.. PP

                  NAM  80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                             Wk+ g++++++  +g+l g+k+++v+y    +++ +++tdW +h+y++
  Pavir.9KG618400.1.p 153 ---WKKIGTSRSIFL-DGTLQGCKEVFVLYadMMSDKGSHQTDWRLHQYHI 199
                          ...************.999***********5434666668*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-2564217IPR003441NAC domain
PROSITE profilePS5100523.79270217IPR003441NAC domain
PfamPF023653.6E-871199IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 790 aa     Download sequence    Send to blast
MATGSSSLIS HLDRSPDPDH CPLSGRDRLT VQPPASARAE SSPRLPDRCE ASVDTGRADG  60
GSQQQSWPGL PRGVEFNPSD GDLLWHLAAE VGNGQAERHP FINKFITSVV DDRGFSYTHP  120
RDIPGVRQDG HASYFFHRRF ESYSNEGDEN IIWKKIGTSR SIFLDGTLQG CKEVFVLYAD  180
MMSDKGSHQT DWRLHQYHIR NTVKHEEELV LSKIFFESRD SLCELAEEAR VEAELDVSTP  240
VDSREKCITC SNPRVYNETD DLDHMSLKER YRILLADKST CPATLSARES SKTASKRNQE  300
VTAYKEDTCS MLQEISSAPP IIESNPMDDS NSSRLLCGDD SGFLSISGIS SCTGPSICEV  360
GCSHDPVEEN QVGGTATCGS ESSELIVRKQ GALLADVKLE PAFEGYEIDP SKSPQENPAQ  420
AEGSVPSLGV KDELNECDLP GLCEKKFSSR KRRKRKTTSN SNEKMLEEDA YTNDEGIAYC  480
SRRRRMKKTA TDSIEKALDE DAPGLLEILL TRGIAVQEIK LYGAEEDNEM IPDSSESSFE  540
DLENVIANIF PKRASLLKLS IARHEKGEKA IYCLSCLISL IEQSRYLQFR DCPVEWGWCR  600
DLQSFIFVFR SHNRFLLPIN LCPIFLVKMV GRLVLMVPIF ILLHRIVLER PEYGYATYFF  660
EVVQSLSIEW QIRRLVIAMK LSGCGRTALI ENRPLLVGED LTEGEAHVLE EYGWIRNTGL  720
GTMVNYRDRV VHDRWTEKSV SDWRAKIGKL LMTGYAEGQS VTVYGPKKVA NLLEATGDAE  780
IDIKLEDPF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1449455RKRRKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.111220.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG618400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795332.10.0uncharacterized protein LOC112875626 isoform X1
TrEMBLA0A3L6S3X50.0A0A3L6S3X5_PANMI; Uncharacterized protein
STRINGPavir.Ib00786.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74793239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.18e-37NAC family protein