PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG626000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 234aa    MW: 27048.7 Da    PI: 5.4479
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG626000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3512.6e-16151101100
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          ffk+l     + +  l+lp kfa++ g    ++ +l+l   e    W+v++  + k+g ++l+ GWk+F++a+ L++g  +vF++d+   
  Pavir.9KG626000.1.p  15 FFKIL--LPGMYEEALRLPAKFARDLGAR--RELKLQLAGgEMMPLWDVEVFADEKRGDMYLGHGWKKFARAHALRDGYLLVFRYDD-GA 99 
                          78888..444555569*******999966..444677777455599*****99********************************87.77 PP

                          E..EEEEE-SS CS
                   B3  90 felvvkvfrks 100
                          + l+v+vf++s
  Pavir.9KG626000.1.p 100 AALTVTVFDRS 110
                          779*****985 PP
2B3452e-14114197387
                          EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                   B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgr 87 
                          k+  +  + +++ l +p +f ++hg+  ++ ++l+     grsW+v+l  +++++     + ++ GW +F+ +ngL++gD++ F+++++
  Pavir.9KG626000.1.p 114 KQYAHLGTKQNQYLNVPVEFQDAHGYARRRRVELR---MGGRSWSVNL--KRSKRVlgdrTAFKYGWHQFCVDNGLEVGDTCFFRVIRE 197
                          556666677889999*********99988876666...478*******..444443445599***********************8874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.56E-1913108No hitNo description
PROSITE profilePS5086312.92913110IPR003340B3 DNA binding domain
SuperFamilySSF1019361.37E-1614112IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-1615112IPR015300DNA-binding pseudobarrel domain
PfamPF023621.0E-1315109IPR003340B3 DNA binding domain
SMARTSM010199.7E-1515110IPR003340B3 DNA binding domain
SMARTSM010190.013112204IPR003340B3 DNA binding domain
PROSITE profilePS5086311.702112228IPR003340B3 DNA binding domain
PfamPF023621.1E-11114197IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-21124207IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-15125198IPR015300DNA-binding pseudobarrel domain
CDDcd100176.77E-12127198No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MEEEMAGLNL GDFEFFKILL PGMYEEALRL PAKFARDLGA RRELKLQLAG GEMMPLWDVE  60
VFADEKRGDM YLGHGWKKFA RAHALRDGYL LVFRYDDGAA ALTVTVFDRS TCCKQYAHLG  120
TKQNQYLNVP VEFQDAHGYA RRRRVELRMG GRSWSVNLKR SKRVLGDRTA FKYGWHQFCV  180
DNGLEVGDTC FFRVIREGAC VDDDDDEEWE DEWEDDEHVL KVEVRKKNGT MLT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG626000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796563.11e-137B3 domain-containing protein Os03g0212300-like
RefseqXP_025796564.11e-137B3 domain-containing protein Os03g0212300-like
SwissprotQ10Q263e-80Y3123_ORYSJ; B3 domain-containing protein Os03g0212300
TrEMBLA0A2S3IT121e-136A0A2S3IT12_9POAL; Uncharacterized protein
STRINGPavir.Ia04671.1.p1e-136(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47483264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.16e-11B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]