PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG628200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 88aa    MW: 10145.1 Da    PI: 9.9052
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG628200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.11.1e-1522804299
                         TS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3 42 sgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                          g+sWev++   ++++g+  + +GWk+Fv++n+L+ gD ++F+l ++++ +++v v+r+
  Pavir.9KG628200.1.p 22 CGKSWEVRCVLkKGNPGTKRFLQGWKQFVRDNKLQMGDLCLFELLENMKHTMKVYVIRA 80
                         59*******77777777766667**********************99***9****9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.592181IPR003340B3 DNA binding domain
SuperFamilySSF1019361.83E-18182IPR015300DNA-binding pseudobarrel domain
CDDcd100172.31E-14179No hitNo description
SMARTSM010190.0086281IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-18281IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-132280IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MPRVYADVYL PFVDQTLMLQ CCGKSWEVRC VLKKGNPGTK RFLQGWKQFV RDNKLQMGDL  60
CLFELLENMK HTMKVYVIRA KSILASS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG628200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021304713.19e-38uncharacterized protein LOC8062495 isoform X1
SwissprotQ851V17e-25Y3160_ORYSJ; Putative B3 domain-containing protein Os03g0621600
TrEMBLA0A1B6QJB44e-40A0A1B6QJB4_SORBI; Uncharacterized protein
STRINGPavir.J20850.1.p2e-58(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-13B3 family protein