PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG649900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 238aa    MW: 26686.7 Da    PI: 9.5548
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG649900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.62.9e-15137227199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f+k++++s+v +  +l lp +f+++++ k  ++  +tl de+ ++++ ++    ++++  l++GW +F+  +g+++gD  vF+l++ ++f
  Pavir.9KG649900.1.p 137 FVKAMLHSHVVRGFWLGLPSHFCDTYMPK--QDSIITLVDEKDEEFDTNY--LAYKKG--LSGGWAGFAICHGMQDGDAAVFQLIKPTTF 220
                          89************************744..5669***************..555555..9***********************986777 PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                            +v+++r 
  Pavir.9KG649900.1.p 221 --KVHIIRV 227
                          ..9998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.4E-18128227IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-22130228IPR015300DNA-binding pseudobarrel domain
CDDcd100176.33E-24135226No hitNo description
PROSITE profilePS5086311.166137228IPR003340B3 DNA binding domain
SMARTSM010192.5E-16137228IPR003340B3 DNA binding domain
PfamPF023621.8E-13137227IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MEAAAKPGMS AYEAARERTV LENKRKMEAL NLRHLSAAIM AAPKTPSPMK QKRRRIIEDA  60
VVVPSPPRRS RRLANLPEVK YAEIAPHSAD RMTRSPRKLT ARIYLASRGS ISMKARMEAE  120
RKAEELESQL DPEFPSFVKA MLHSHVVRGF WLGLPSHFCD TYMPKQDSII TLVDEKDEEF  180
DTNYLAYKKG LSGGWAGFAI CHGMQDGDAA VFQLIKPTTF KVHIIRVSSD DQSEEGE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15155KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG649900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0873000.0BT087300.1 Zea mays full-length cDNA clone ZM_BFb0032O11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797698.11e-162B3 domain-containing protein Os03g0184500-like
SwissprotQ10QS91e-141Y3845_ORYSJ; B3 domain-containing protein Os03g0184500
TrEMBLA0A2S3IUR61e-160A0A2S3IUR6_9POAL; Uncharacterized protein
STRINGSi037266m1e-152(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-48B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]