PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG651800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 319aa    MW: 34286.4 Da    PI: 4.5535
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG651800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.7e-1893142255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          +ykGVr+++ +g+W+AeIrdp+    +  r++lg+f +ae Aa a++aa++ ++g
  Pavir.9KG651800.1.p  93 QYKGVRRRP-WGKWAAEIRDPV----KgVRVWLGTFSSAEAAALAYDAAARDIRG 142
                          69*******.**********75....44***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.19E-1892150No hitNo description
Gene3DG3DSA:3.30.730.105.2E-3193151IPR001471AP2/ERF domain
SMARTSM003801.4E-3593156IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-2293151IPR016177DNA-binding domain
PfamPF008476.3E-1293142IPR001471AP2/ERF domain
PROSITE profilePS5103224.02693150IPR001471AP2/ERF domain
PRINTSPR003678.7E-1094105IPR001471AP2/ERF domain
PRINTSPR003678.7E-10116132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MCGGAILAEL IPSAPARRVT PGHVWPAAKQ QRRADDFEAA FREFDSDSDE EVESKQLGFN  60
ASPAGAATRK LRRQQQQREL AAPAPSRRRK AAQYKGVRRR PWGKWAAEIR DPVKGVRVWL  120
GTFSSAEAAA LAYDAAARDI RGPRAKLNFP SNADAAPAAG RKRARAAEFV DLVADEEDEQ  180
QRHAASGVKH EAGATDSETS ESGGALPDFS WQGVLAYDEA PAPEAFEAED QSRGASKRPR  240
TEPESADEAS PRASDSESDA LFDAFLFGDQ LAYFNGGAYE SLDSLFSADA VQSNAAADEG  300
MGLWSFDDGC LVEDNLSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2090155268ATERF1
3gcc_A1e-2090155268ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18799RRKAAQYKGVRRR
2159165GRKRARA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.4360.0callus| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG651800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0685511e-76BT068551.1 Zea mays full-length cDNA clone ZM_BFb0310P02 mRNA, complete cds.
GenBankEU9557151e-76EU955715.1 Zea mays clone 1543173 ethylene-responsive element binding protein 2 mRNA, complete cds.
GenBankEU9559811e-76EU955981.1 Zea mays clone 1554709 ethylene-responsive element binding protein 2 mRNA, complete cds.
GenBankKJ7276121e-76KJ727612.1 Zea mays clone pUT5520 AP2-EREBP transcription factor (EREB182) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797880.11e-168ethylene-responsive transcription factor ERF073-like
TrEMBLA0A2T7CGR11e-166A0A2T7CGR1_9POAL; Uncharacterized protein
TrEMBLA0A2T8I6491e-166A0A2T8I649_9POAL; Uncharacterized protein
STRINGPavir.Ia04158.1.p1e-176(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43712654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.36e-22ERF family protein