PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG652300.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 293aa    MW: 31860.6 Da    PI: 5.3539
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG652300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.94.4e-17108157255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +grW+AeIrdp+    + +r +lg+f taeeAa+a+++ + +++g
  Pavir.9KG652300.2.p 108 KYRGVRYRR-SGRWAAEIRDPR----QgRRAWLGTFCTAEEAARAYDREASRIRG 157
                          8******99.7*********94....25**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.4E-28108165IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-20108166IPR016177DNA-binding domain
PfamPF008479.2E-11108157IPR001471AP2/ERF domain
PROSITE profilePS5103222.115108165IPR001471AP2/ERF domain
CDDcd000183.01E-27108165No hitNo description
SMARTSM003801.4E-33108171IPR001471AP2/ERF domain
PRINTSPR003671.6E-7109120IPR001471AP2/ERF domain
PRINTSPR003671.6E-7131147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MCGGAILAEL VPERVHRPLT VATLWPAAES GATATASGKR KAADVDDELE AVTDDEEFEA  60
EFQLFVDDDE PSPAASPESS GRRSRVAAPS PAVSGRSVCT SPAPRVNKYR GVRYRRSGRW  120
AAEIRDPRQG RRAWLGTFCT AEEAARAYDR EASRIRGKSA RLNFPLPDEG QGPRRRQRRS  180
TPAPAIDLNL PAVSDDDTID ADDDSDDARR AAEMGGEAVQ SALARIKELI AQGPHGERIV  240
SELKMNGAAG ALQYAALIAE CSRQMEEIAA LRRDLETRER QLVRLVSNVM LR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-16107166161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-16109166664ATERF1
3gcc_A3e-16109166664ATERF1
5wx9_A5e-161081651472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.75340.0callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9KG652300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0370718e-62BT037071.1 Zea mays full-length cDNA clone ZM_BFb0153L12 mRNA, complete cds.
GenBankKJ7275488e-62KJ727548.1 Zea mays clone pUT5408 AP2-EREBP transcription factor (EREB179) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796393.11e-155ethylene-responsive transcription factor RAP2-12-like
TrEMBLA0A3L6SIM61e-170A0A3L6SIM6_PANMI; Ethylene-responsive transcription factor RAP2-12-like
STRINGPavir.Ib00525.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.36e-20related to AP2 12