PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG002200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 301aa    MW: 32189 Da    PI: 5.9893
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG002200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM22.33.6e-0781417127
                  NAM   7 FhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..........kvkaeekewyfFskrdkkyatgk....rknratksgy 82 
                          F+P+d+      L++  +g   +  ++++++d++++ P dL +             + +  w f+++++ k+a+gk    r++ +  +g+
  Pavir.9NG002200.1.p   8 FRPRDDASSIALLRNLRSGAAAS--SFVHRADVCSAAPADLVAnlepvpgtdlDQGGYNAIWLFYCPKRFKNAQGKpsghRQRAIGGDGT 95 
                          88888877767666666666544..589*************744778887754222344589******9999976644424444444555 PP

                  NAM  83 .WkatgkdkevlskkgelvglkktLvfy...kgrapkgektdWvmheyr 127
                           W++    k+v+  +g+   +   L +     g+++  ++  W+m ey 
  Pavir.9NG002200.1.p  96 cWHSEAGPKPVKGLDGA---TLCNLSYGrkeGGSSRAFNRMGWCMTEYD 141
                          5**********984443...344566653323466677799******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100513.9612160IPR003441NAC domain
SuperFamilySSF1019411.83E-128160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MAAEDGSFRP RDDASSIALL RNLRSGAAAS SFVHRADVCS AAPADLVANL EPVPGTDLDQ  60
GGYNAIWLFY CPKRFKNAQG KPSGHRQRAI GGDGTCWHSE AGPKPVKGLD GATLCNLSYG  120
RKEGGSSRAF NRMGWCMTEY DEKHGGGDGG DHVLCKIYRS SSSLAKGKSK LPTTHHSSGS  180
KRKATGDEPL ARPTKMSHKH ACAGVDHQED LLLTDQQMAM PETLCPTEED QFQENIQFTM  240
EELLGGPVTM EELLGGPVYG EYGGCSPNTQ FTMDEMFSRC CGPPTAVAPM DAGFFDGLAF  300
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG002200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463549.12e-51uncharacterized protein LOC8079646
TrEMBLA0A3L6S6B11e-169A0A3L6S6B1_PANMI; Uncharacterized protein
STRINGPavir.Ia00012.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4574632