PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG004800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 821aa    MW: 92681.7 Da    PI: 5.8299
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG004800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.22.8e-1880164191
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          +fY++YA ++GF v+++ks+ + + g + +  +vC+k+g+ +e+        + r++ +t+C+a+++ +++ dg  ++t+++leHnH+l+
  Pavir.9NG004800.1.p  80 NFYKRYALRTGFGVCVKKSSFT-KAGLCRRLVLVCNKWGNGKEDACY-----QARPTAKTNCQATVVARLWGDGLLHLTDVNLEHNHALN 163
                          6*****************9998.6777****************9999.....999*********************************97 PP

                 FAR1  91 p 91 
                          p
  Pavir.9NG004800.1.p 164 P 164
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.7E-1680164IPR004330FAR1 DNA binding domain
PfamPF105511.3E-26267359IPR018289MULE transposase domain
PROSITE profilePS509669.26548584IPR007527Zinc finger, SWIM-type
SMARTSM005750.0017559586IPR006564Zinc finger, PMZ-type
PfamPF044341.5E-5560580IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 821 aa     Download sequence    Send to blast
MMEVCMNPGE ELDFGGNQED DDEAGDISPG SKELAAMVEA AAAAEGVDLD DGAAASAAQY  60
GDDRTPRDGM VFKSYEEVLN FYKRYALRTG FGVCVKKSSF TKAGLCRRLV LVCNKWGNGK  120
EDACYQARPT AKTNCQATVV ARLWGDGLLH LTDVNLEHNH ALNPSAARFL RCYKTLPSGM  180
SKDLVVRAAR GECSSAGDID VPIFDDWGRL KIGEADVVAI NSFFAEMQAK LPNSFYVMDF  240
YVEGHLRSIL WADSRSRTAY QYFSDAILID TTCLRNKYQV PLVSFLGVNH HGHLVLLGCG  300
LLSDASTESF LWLFKSWLTC MKGRSPNAVV TDECVAIKVA VREVFPKTRH RISDWHVLRS  360
ISEKLGELPE YEAMGTELET VIYDSLNDDE FDARWKDWID RFGLQDNEWI TFLYENRHLW  420
APAFLKDAFW AGLWTFSQHE SPSAFFEDSI NSETTLVSFL ASYMMLLDKK YKMEQQDDFD  480
SLNSSRVVIS KYPMEEQLSR LYTLNMFIKF QDELKATMHC QVQLDGSASS FIVIDLTEPA  540
SEMLNKKYEV VHCMAANRME CNCGLFQFSG IICRHALSVL KWQQVYDILP CYVLSRWRND  600
FKLLHYPDNP SKDLATNNHV ERYDYISLQF LRLVEIGMSS DEKYRHAVRL IKDIKETLLD  660
DNLCRDLEQK LTPAERAIVN GDSHTQPGSS EGGPAKKRRG RPPKKSKEIS VNSMDSLLVS  720
TDVTQKGAFH SSSTASNLGT HVRTHGVVDL MEEVNPSELS FNSRYGVQSG HPHHFGNQLH  780
AGNTLQFGQP TSAAEHSRVQ WVFPNNMYQD DQVPYGRRTS *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.158540.0leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG004800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793150.10.0protein FAR1-RELATED SEQUENCE 6-like
TrEMBLA0A2T8HZQ70.0A0A2T8HZQ7_9POAL; Uncharacterized protein
STRINGPavir.J00125.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80010.11e-109FAR1-related sequence 8