PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG014700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HSF
Protein Properties Length: 522aa    MW: 56410.4 Da    PI: 4.728
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG014700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.71.2e-35531442102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+ye+++d+++++++sw   +nsf+v+++ efa+++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k
  Pavir.9NG014700.1.p  53 FLMKTYEMVDDPATDDVVSWGPGNNSFIVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQK 133
                          9*********************99*****************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++i+r+k 
  Pavir.9NG014700.1.p 134 HLLKTINRRKP 144
                          ********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467858.57E-3649142IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.1E-6249142IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.107.4E-3950142IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.2E-195376IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.5E-3153142IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-1991103IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434092116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-19104116IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MQGGVAAAAA AAAAAAATVT TAVAPPVAPA PAAATAHAAV GNGGAAAAPP PPFLMKTYEM  60
VDDPATDDVV SWGPGNNSFI VWNTPEFARD LLPKYFKHSN FSSFVRQLNT YGFRKVDPDR  120
WEFANEGFLR GQKHLLKTIN RRKPSLQGNS QPQQPQLQNA PLPACVEVGK FGLEEEIERL  180
KRDKNVLMQE LVRLRQQQQT TDHQLQTLGK RLQGMESRQQ QMMSFLAKAM QSPGFLAQFV  240
QQNENSRRRI VAVNKKRRLP KQDDGLDSES ASASLDGQIV KYQPMINEAA KAMLRKILKL  300
DVSHRFESVG NSDNFLLENY LPAAQGFDSS SSTRNSGVTL AEVPANSGLP YVAASSGLSA  360
ICSSSVAPEI QCPVVLDNSS SNQVPNMSVV PPVSKPIAPG SDITIPEFPD LADIVSDDSD  420
IPGGPFGMPG PEFPLAEEGD DSVPIETDEI LYNDETQKLP AIVDSFWEQF LVGSPLSVDN  480
DEVDSGVLDT RETLPENGWK KVEHVANLTE QMGLLSPNHR G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-274014216129Heat shock factor protein 1
5d5v_B9e-274014216129Heat shock factor protein 1
5d5v_D9e-274014216129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.41610.0callus| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG014700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1847250.0KF184725.1 Saccharum hybrid cultivar R570 clone BAC 133K20 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794615.10.0heat stress transcription factor A-1-like
SwissprotQ84T610.0HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA0A2S3IG210.0A0A2S3IG21_9POAL; Uncharacterized protein
STRINGPavir.Ia00087.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50973151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-118heat shock factor 3
Publications ? help Back to Top
  1. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]