PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG036400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 148aa    MW: 15012.2 Da    PI: 10.9927
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG036400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00039106128123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ Cg  F     L  H+r+H
  Pavir.9NG036400.1.p 106 HQCHVCGLGFEMGQALGGHMRRH 128
                          79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.934673IPR007087Zinc finger, C2H2
SMARTSM003550.964668IPR015880Zinc finger, C2H2-like
PfamPF139126.7E-104670IPR007087Zinc finger, C2H2
SuperFamilySSF576673.24E-64668No hitNo description
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
SuperFamilySSF576673.24E-6101128No hitNo description
SMARTSM003550.31106128IPR015880Zinc finger, C2H2-like
PfamPF139123.3E-10106131IPR007087Zinc finger, C2H2
PROSITE profilePS501579.764106133IPR007087Zinc finger, C2H2
PROSITE patternPS000280108128IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MTKHPRDAAA GDVTLSLALS LGGLPAGERG ASKRPRRAAG GGEGEFVCKT CSRAFASFQA  60
LGGHRTSHLR GRHGLALGMP AAAPAAKHQA AAKDPTTKAP APAASHQCHV CGLGFEMGQA  120
LGGHMRRHRE EAAAAAQAPP VLLQLFV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG036400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0869791e-43BT086979.2 Zea mays full-length cDNA clone ZM_BFb0223D14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466195.13e-55zinc finger protein ZAT12
TrEMBLA0A3L6TJ871e-61A0A3L6TJ87_PANMI; Zinc finger protein ZAT8-like
STRINGPavir.Ia00291.1.p7e-98(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46090.12e-16C2H2 family protein