PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG036500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 187aa    MW: 20031.4 Da    PI: 9.0764
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG036500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.00156183123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ C++ F++   L  H  +H
  Pavir.9NG036500.1.p 61 FVCKTCSRAFTSFQALGGHRTSH 83
                         89**********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.49E-55787No hitNo description
SMARTSM003550.616183IPR015880Zinc finger, C2H2-like
PfamPF139125.7E-106185IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.0766188IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
SuperFamilySSF576671.0E-4119147No hitNo description
PfamPF139122.9E-8121147IPR007087Zinc finger, C2H2
SMARTSM003552.3122144IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.224122149IPR007087Zinc finger, C2H2
PROSITE patternPS000280124144IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MKHPRDQQHQ EEVSLALSLS TTTTDSSTTS DSSATAPPAA AAKRARRRRG PVVATSGEGD  60
FVCKTCSRAF TSFQALGGHR TSHLRGRHGL ELGVGAKALR QHKAAAGGGD KRRQQQQQHQ  120
THDCHICGLG FELGQALGGH MRRHREEMGA AEAADAWVWR SVARLPEELE VQSAAADPPV  180
LLELFA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG036500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9574022e-46EU957402.1 Zea mays clone 1590997 ZFP16-2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795976.13e-87zinc finger protein ZAT5-like
TrEMBLA0A3L6S7X82e-97A0A3L6S7X8_PANMI; Zinc finger protein ZAT12-like
STRINGPavir.Ia00292.1.p1e-132(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46070.12e-19C2H2 family protein