PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG043300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 363aa    MW: 39214 Da    PI: 5.8674
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG043300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.48.2e-112883281055
                          HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          rrRR+riN+++  L++l+P+      +K++ +++Le+Av+Y++ Lq
  Pavir.9NG043300.1.p 288 RRRRERINERLKILQKLVPNG-----TKVDISTMLEEAVHYVRFLQ 328
                          9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.193278327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.11E-15280344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-14283341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-13284333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-8288328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.28E-4294332No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MSQAELAAWL ETRDAHWSSQ YPAAQAPDEE SEIVAQFLAA PYPYPNDDDD DDDDEQEQKH  60
QHHNKLGEIS ATSSTYWPEP GHVTDPGNGA CYWPSNGDAS NSNSSGSGAY FDGSGCCYYY  120
LAEPDVSLGI NTRTTTLPCT SSIDLNLLGD GEKEGTTAVV HPVPPNPSSP ADHPERPLIH  180
THTAGHRNGG DDDGAAARAA VSLPKRKAQA GHDGGDIGRH KKKEKKAASK TAQKFSQESS  240
QSKGSCSADE SMSNCSEVNR RSGVHGGGNA KARAAKGSAT DPQSLYARRR RERINERLKI  300
LQKLVPNGTK VDISTMLEEA VHYVRFLQQQ IKMLSSDEMW MYAPIAYNGM SLGIDLKIST  360
LQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204225KRKAQAGHDGGDIGRHKKKEKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG043300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796889.10.0transcription factor bHLH85-like
TrEMBLA0A2S3IHT20.0A0A2S3IHT2_9POAL; Uncharacterized protein
STRINGPavir.J00626.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144452123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.16e-35bHLH family protein