PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG046900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 771aa    MW: 83895.7 Da    PI: 5.8149
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG046900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.41.7e-29541597259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dgy+WrKYGqK+ k++e prsYY+Ct  gCpvkk vers  d+ ++eitY+g+Hnh+
  Pavir.9NG046900.1.p 541 KDGYSWRKYGQKQLKDAESPRSYYKCTRDGCPVKKVVERSF-DGFITEITYKGRHNHP 597
                          8****************************************.***************8 PP
2WRKY102.42.6e-32670728159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg++ prsYY+Ct  +C+v+k++er+++dp++v +tY+g+Hnh+
  Pavir.9NG046900.1.p 670 LDDGYRWRKYGQKVVKGNPRPRSYYKCTADNCNVRKQIERASTDPRCVLTTYTGRHNHD 728
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF508142.48E-21499IPR011038Calycin-like
Gene3DG3DSA:2.40.128.201.1E-329184IPR012674Calycin
PfamPF122041.2E-1712337IPR022017Domain of unknown function DUF3598
SuperFamilySSF508142.48E-21126183IPR011038Calycin-like
Gene3DG3DSA:2.40.128.205.6E-41203343IPR012674Calycin
SuperFamilySSF508144.33E-28203342IPR011038Calycin-like
PROSITE profilePS5081123.169535599IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-26537599IPR003657WRKY domain
SuperFamilySSF1182901.7E-23539599IPR003657WRKY domain
SMARTSM007744.9E-32540598IPR003657WRKY domain
PfamPF031066.9E-23541597IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.7E-33655730IPR003657WRKY domain
SuperFamilySSF1182901.16E-27663730IPR003657WRKY domain
PROSITE profilePS5081135.439665730IPR003657WRKY domain
SMARTSM007741.5E-35670729IPR003657WRKY domain
PfamPF031067.9E-24671728IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 771 aa     Download sequence    Send to blast
MSIDNLHRFF DLNIGKWDGS FYQFDAYGRV LREISTRLSV STYGEDNLIS LLQSLYTKQA  60
SSAISIVDED ESEPEWVEYK IKETNMFTVD KYQQIGFFPE EKAFALRYQT AGMLETVLRV  120
GVLGEDDTGE ESPKNLKIPS RKPSIVCENC LYSLEGNGRV RAFHIMDPKG VLDTLLVFHE  180
RQGSAVPQPL IHSPVGTENA SRDRINALLG RWEGHSVTKR SGVYGATLAE ADTAVVLKMD  240
SNGQLIQDTL TTKIRTGTTT TVNWTGSANN NLLQFDGGYE ITLLPGGMYM GYPSDISKSV  300
AQLDSFHLEF CWMESPEKRQ RLVRTYDSAG LAVSSTYFLE TKVAAMDDRR GRGDAMRQRP  360
FAHAAQGQER VFDGGGGGAG PGPAFGCDFD QGSSLMALLG AGGVSSSQPP LPTWGVEEVT  420
AAPAINLVPQ SFAMTSYAPP APPYQQPTTF AQSPLGGRMD PYPPYLLADP PPQWPPPRST  480
AVGSASSFPP QNFAVVLPRY DQDMQQLRAS ALFGVGSSQP HGLGLPFPPP PPPAAIEQPA  540
KDGYSWRKYG QKQLKDAESP RSYYKCTRDG CPVKKVVERS FDGFITEITY KGRHNHPRPQ  600
ERGHAGAGND ALAAAEAEDM EGPSDDDDDA LHEDDVDGAP GMGAAGGEAG QRVVKKPKII  660
IQTPSEVDLL DDGYRWRKYG QKVVKGNPRP RSYYKCTADN CNVRKQIERA STDPRCVLTT  720
YTGRHNHDPP GRGNEATAAC GSSASQPTPP GGGSGSFQQT GGARQLKEER *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yvf_A1e-152134318357BFA1
5yvf_B1e-152134318357BFA1
5yvf_C1e-152134318357BFA1
5yvf_D1e-152134318357BFA1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.337950.0callus| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG046900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9618220.0EU961822.1 Zea mays clone 238426 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690074.10.0PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC102720317
TrEMBLK4A5N40.0K4A5N4_SETIT; Uncharacterized protein
STRINGPavir.Ia00386.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28753236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01080.11e-60WRKY DNA-binding protein 58