PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9NG069200.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 1196aa MW: 134189 Da PI: 6.1804

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG069200.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	23.1	2.4e-07	127	186	1	60
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrt 60 +fY Y+++vGF+ ++ ++++s nge ++++f+C + +++++ k +++ + ++ae+ + Pavir.9NG069200.2.p 127 EFYYGYGERVGFKACTGSNRRSVGNGEKIMQRFQCWRGNYSSRRGKGKDSDEGKEAEEMV 186 6***********************************999998888874443333333333 PP
2	FAR1	74.2	2.8e-23	423	507	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY +YA+ GFsvrk k+ +n ++r +vCskeg+r ++ ++ +++++r+etrtgC+a++++k + +gk++vt+++++HnH+ Pavir.9NG069200.2.p 423 EFYVNYAEAEGFSVRKGFLDKTAKNV-KKSRAYVCSKEGFRPKNISA--ESKKPRPETRTGCQAHMTIKITASGKYVVTEFVSDHNHD 507 6******************96555.899*********9988..99**********************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.8E-5	127	198	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	7.5E-21	423	507	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.0E-22	609	700	IPR018289	MULE transposase domain
Pfam	PF04434	2.0E-6	876	920	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.534	876	923	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.3E-7	898	925	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1196 aa Download sequence Send to blast
MVDRAAAPAE TASCDPTPEP DAPPRQSGAA DEQEDAPAGA AAGPPPPPQQ AGDADEGEDV 60 SGSPAGPPAE RCGAMMEVVG KDGGGGKWKV SKLVVEHNHE LQVAPGEVAA TVPALGMEFD 120 SVDAAKEFYY GYGERVGFKA CTGSNRRSVG NGEKIMQRFQ CWRGNYSSRR GKGKDSDEGK 180 EAEEMVEAAA AAAAAARKRK REPYKTRSRN RNAGKKDAEV VEVKGVGVGG PENGLEVQNG 240 RGSRRGRSKK GMVEQDGKSV AGLEVEKDGV QDAAADSNDE ELEDDGKDQE GVEEDVQVEV 300 KRGRGRPRKA VTEDDALQAH VLRELGVRAS QYNHEERKKI ISKYLSKRQS RPASNRPTKP 360 SRQPSERRAK RLEKQNLKME EKAEGKEDDI IEAEPDPENE VVAGPGGELK IGMVFLNEDK 420 AYEFYVNYAE AEGFSVRKGF LDKTAKNVKK SRAYVCSKEG FRPKNISAES KKPRPETRTG 480 CQAHMTIKIT ASGKYVVTEF VSDHNHDREA PLVDIQILKS QKLLAKVQQP PDPPKVVLIP 540 NEYKNYTRTK CIKDMQLGDA QAISEYLRRM KGENPSFFYA IQVDEDDQFT NVFWADIKSI 600 MDYNYFGDVV CIDTRYCTID YGRPLLLFIG VNHHKQPIIF GTALIYDDSV QSFRWLLETF 660 KSAMSGKQPK TVLTDQSTSL IDAISTVWPG TTHRFSLLHL FLTASNVLRD NFQDSETFAL 720 DFSRWLYDYE EEDFISSWEI LSEKYNLKDS EWLSKLYDDR ERWALPYGRD TFCADIAATL 780 RSDNTDTILK DLLKSEVDLR TFFNSYDKFL VEKRLAEQQA DYLGAQMTQR VAPLRLLWQV 840 ANSYTPSLFE MFRMEFEQIS NCIVYSCGEI GPISEYQVTV KDRPRSQFVR FDLTECMAVC 900 SCKKFEFTGL PCCHVLKILE LRNIKELPPH YILKRWRKDA QSEAPGESYG YAAIDEDPRF 960 SLSRRYNTLC RTLYKIAAKA SESFEAYAFV ENQYEQLVEQ VEVLLQAKLH DKSSLSAILK 1020 GHQPHLLQSE VSNSEPRRVT AKKNKNVEPR RQQQSPLDSN KKKKARQGLL EPEEIDIPLR 1080 IVPPTVSNDI PNHLRTPTSQ FLAPSHIMQA PYVAQQFGLG SLQGFPGMSP FGQLQEPAPL 1140 HQPSHLQPPP FHNGPQIPQA PPPDIQSLQF LSSNPQLGHQ TTDQGQYTIP VWDFL*

Sequence ? help Back to Top

Protein Sequence Length: 1196 aa Download sequence Send to blast

MVDRAAAPAE TASCDPTPEP DAPPRQSGAA DEQEDAPAGA AAGPPPPPQQ AGDADEGEDV  60
SGSPAGPPAE RCGAMMEVVG KDGGGGKWKV SKLVVEHNHE LQVAPGEVAA TVPALGMEFD  120
SVDAAKEFYY GYGERVGFKA CTGSNRRSVG NGEKIMQRFQ CWRGNYSSRR GKGKDSDEGK  180
EAEEMVEAAA AAAAAARKRK REPYKTRSRN RNAGKKDAEV VEVKGVGVGG PENGLEVQNG  240
RGSRRGRSKK GMVEQDGKSV AGLEVEKDGV QDAAADSNDE ELEDDGKDQE GVEEDVQVEV  300
KRGRGRPRKA VTEDDALQAH VLRELGVRAS QYNHEERKKI ISKYLSKRQS RPASNRPTKP  360
SRQPSERRAK RLEKQNLKME EKAEGKEDDI IEAEPDPENE VVAGPGGELK IGMVFLNEDK  420
AYEFYVNYAE AEGFSVRKGF LDKTAKNVKK SRAYVCSKEG FRPKNISAES KKPRPETRTG  480
CQAHMTIKIT ASGKYVVTEF VSDHNHDREA PLVDIQILKS QKLLAKVQQP PDPPKVVLIP  540
NEYKNYTRTK CIKDMQLGDA QAISEYLRRM KGENPSFFYA IQVDEDDQFT NVFWADIKSI  600
MDYNYFGDVV CIDTRYCTID YGRPLLLFIG VNHHKQPIIF GTALIYDDSV QSFRWLLETF  660
KSAMSGKQPK TVLTDQSTSL IDAISTVWPG TTHRFSLLHL FLTASNVLRD NFQDSETFAL  720
DFSRWLYDYE EEDFISSWEI LSEKYNLKDS EWLSKLYDDR ERWALPYGRD TFCADIAATL  780
RSDNTDTILK DLLKSEVDLR TFFNSYDKFL VEKRLAEQQA DYLGAQMTQR VAPLRLLWQV  840
ANSYTPSLFE MFRMEFEQIS NCIVYSCGEI GPISEYQVTV KDRPRSQFVR FDLTECMAVC  900
SCKKFEFTGL PCCHVLKILE LRNIKELPPH YILKRWRKDA QSEAPGESYG YAAIDEDPRF  960
SLSRRYNTLC RTLYKIAAKA SESFEAYAFV ENQYEQLVEQ VEVLLQAKLH DKSSLSAILK  1020
GHQPHLLQSE VSNSEPRRVT AKKNKNVEPR RQQQSPLDSN KKKKARQGLL EPEEIDIPLR  1080
IVPPTVSNDI PNHLRTPTSQ FLAPSHIMQA PYVAQQFGLG SLQGFPGMSP FGQLQEPAPL  1140
HQPSHLQPPP FHNGPQIPQA PPPDIQSLQF LSSNPQLGHQ TTDQGQYTIP VWDFL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	300	308	KRGRGRPRK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.9356	0.0	callus\| leaf\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG069200.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025795877.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A3L6TUH1	0.0	A0A3L6TUH1_PANMI; Protein FAR1-RELATED SEQUENCE 5-like
STRING	Sb01g006380.1	0.0	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-100	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.9NG069200.2.p