PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG069200.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 838aa    MW: 96033 Da    PI: 6.4321
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG069200.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR174.81.7e-2365149188
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                          +fY +YA+  GFsvrk    k+ +n   ++r +vCskeg+r ++ ++  +++++r+etrtgC+a++++k + +gk++vt+++++HnH+
  Pavir.9NG069200.3.p  65 EFYVNYAEAEGFSVRKGFLDKTAKNV-KKSRAYVCSKEGFRPKNISA--ESKKPRPETRTGCQAHMTIKITASGKYVVTEFVSDHNHD 149
                          6********************96555.899*************9988..99************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.7E-2165149IPR004330FAR1 DNA binding domain
PfamPF105511.9E-22251342IPR018289MULE transposase domain
PROSITE profilePS5096610.534518565IPR007527Zinc finger, SWIM-type
PfamPF044341.3E-6518562IPR007527Zinc finger, SWIM-type
SMARTSM005753.3E-7540567IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    Send to blast
MPSRQPSERR AKRLEKQNLK MEEKAEGKED DIIEAEPDPE NEVVAGPGGE LKIGMVFLNE  60
DKAYEFYVNY AEAEGFSVRK GFLDKTAKNV KKSRAYVCSK EGFRPKNISA ESKKPRPETR  120
TGCQAHMTIK ITASGKYVVT EFVSDHNHDR EAPLVDIQIL KSQKLLAKVQ QPPDPPKVVL  180
IPNEYKNYTR TKCIKDMQLG DAQAISEYLR RMKGENPSFF YAIQVDEDDQ FTNVFWADIK  240
SIMDYNYFGD VVCIDTRYCT IDYGRPLLLF IGVNHHKQPI IFGTALIYDD SVQSFRWLLE  300
TFKSAMSGKQ PKTVLTDQST SLIDAISTVW PGTTHRFSLL HLFLTASNVL RDNFQDSETF  360
ALDFSRWLYD YEEEDFISSW EILSEKYNLK DSEWLSKLYD DRERWALPYG RDTFCADIAA  420
TLRSDNTDTI LKDLLKSEVD LRTFFNSYDK FLVEKRLAEQ QADYLGAQMT QRVAPLRLLW  480
QVANSYTPSL FEMFRMEFEQ ISNCIVYSCG EIGPISEYQV TVKDRPRSQF VRFDLTECMA  540
VCSCKKFEFT GLPCCHVLKI LELRNIKELP PHYILKRWRK DAQSEAPGES YGYAAIDEDP  600
RFSLSRRYNT LCRTLYKIAA KASESFEAYA FVENQYEQLV EQVEVLLQAK LHDKSSLSAI  660
LKGHQPHLLQ SEVSNSEPRR VTAKKNKNVE PRRQQQSPLD SNKKKKARQG LLEPEEIDIP  720
LRIVPPTVSN DIPNHLRTPT SQFLAPSHIM QAPYVAQQFG LGSLQGFPGM SPFGQLQEPA  780
PLHQPSHLQP PPFHNGPQIP QAPPPDIQSL QFLSSNPQLG HQTTDQGQYT IPVWDFL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.93560.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG069200.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795877.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A3L6SAK30.0A0A3L6SAK3_PANMI; Protein FAR1-RELATED SEQUENCE 5-like
STRINGGRMZM2G463730_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-103FAR1-related sequence 5