PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9NG074900.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 186aa MW: 20178 Da PI: 11.7106

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG074900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37	7.5e-12	63	115	1	53
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 e++++r+rrk++NR++ArrsR+RK++++eeL+ ++ L ae +aL ++l l Pavir.9NG074900.1.p 63 EERRRRQRRKESNRLSARRSRERKQQRLEELRGTAARLRAEKQALEERLRALA 115 6889******************************************9998885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.3E-8	61	127	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.4E-8	61	115	No hit	No description
Pfam	PF00170	5.7E-8	63	115	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.185	65	117	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.16E-7	67	117	No hit	No description
PROSITE pattern	PS00036	0	70	85	IPR004827	Basic-leucine zipper domain
CDD	cd14702	2.21E-12	72	116	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MLSVQEALDL DFAAASSSCG ARDMGMDIIT CGFTPWGPDS CPSLDQDGAA GAGGGGRGGD 60 EEEERRRRQR RKESNRLSAR RSRERKQQRL EELRGTAARL RAEKQALEER LRALARNGVA 120 VCRQNARLRA EAAALARRLR EARRLLALRR IVAGHALSPA RMMPSPLQHQ QAAGVAPLGL 180 ASLMT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	64	72	RRRRQRRKE
2	79	86	RRSRERKQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG074900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025796839.1	3e-69	ocs element-binding factor 1-like
TrEMBL	A0A3L6SCA2	3e-69	A0A3L6SCA2_PANMI; Uncharacterized protein
STRING	Pavir.Ia00317.1.p	2e-79	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13845	24	29

Link Out ? help Back to Top
Phytozome	Pavir.9NG074900.1.p