PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9NG076500.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GRAS

Protein Properties

Length: 197aa MW: 21566.7 Da PI: 9.2281

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG076500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	73.4	4.1e-23	104	195	272	363
GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361 e+kl+++s er+ vEr++lg+e+ +v+ ega+rrerh +l++W r+e aGF++vpls+ a q lr++++ g + e+ g+lvl+ Pavir.9NG076500.1.p 104 ESKLGSDSAERAEVERAVLGEEVWDVLLREGARRRERHDRLQQWAPRMEVAGFRSVPLSYVALRQGINTLRRCGMGGCESREHGGCLVLC 193 678999************************************************************************************ PP GRAS 362 Wk 363 W+ Pavir.9NG076500.1.p 194 WR 195 *7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	10.258	1	186	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.4E-20	104	195	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MPNPSIRYPS DSGGSTTPSP SPPPSCAPLP LRRPLLRAPP QLTPPPSSPP LREAPPAPPP 60 AARPCHPIPC ALRPHSSPRW KPRAPDPTAP PEELHVEELG RRPESKLGSD SAERAEVERA 120 VLGEEVWDVL LREGARRRER HDRLQQWAPR MEVAGFRSVP LSYVALRQGI NTLRRCGMGG 180 CESREHGGCL VLCWRS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG076500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP604	38	176

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	9e-15	scarecrow-like 3

Link Out ? help Back to Top
Phytozome	Pavir.9NG076500.1.p