PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG087800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 397aa    MW: 42082.7 Da    PI: 9.17
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG087800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.4e-19175224255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GVr+++ +g+WvAeIr p++   r+r +lg+f++ae+Aa a+++a+ +l+g
  Pavir.9NG087800.1.p 175 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDSAEDAALAYDKAAFRLRG 224
                          59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.47E-30174232No hitNo description
SMARTSM003803.8E-36175238IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-31175233IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-22175232IPR016177DNA-binding domain
PROSITE profilePS5103223.09175232IPR001471AP2/ERF domain
PfamPF008474.4E-13176224IPR001471AP2/ERF domain
PRINTSPR003672.9E-10176187IPR001471AP2/ERF domain
PRINTSPR003672.9E-10198214IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MAAIDLYTNQ LSSSSSSSSD QELMKALEPF IRSASSPTST TTSPFSYSYS YPYPYSSALP  60
QDSYYLPATS SYTALPPPPP APTATTSFSQ LPPLPQSSSS NVSLAASYPT SSVDAASGLA  120
ALNHLGPVQI HEIQAQLLAQ HQQQQRGGLL AAAAFLGPRV QPMKHAGAPP PLAKLYRGVR  180
QRHWGKWVAE IRLPRNRTRL WLGTFDSAED AALAYDKAAF RLRGDAARLN FPSLRRGGAH  240
LAGRLDASVD AKLTAIYQGL TAESSKAAAT TTATPDSPKA SASTTTTEGD ESVHSASSPP  300
SSLPALFPQQ QQQQQNHPEM ASLDFTEAPW TSPPPPPCTS TSTRPGRSTG TPSSRDKPQQ  360
QAQAQSRAVI FVNGFSLISR SRFGSDGILD IGHSDC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-20174232160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-20173232363ATERF1
3gcc_A3e-20173232363ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG087800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3650401e-102AK365040.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2030H17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002438081.11e-131ethylene-responsive transcription factor RAP2-13
TrEMBLC5Z6Z41e-130C5Z6Z4_SORBI; Uncharacterized protein
STRINGPavir.Ia00345.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.12e-33related to AP2 4