PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG093400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 181aa    MW: 19235.7 Da    PI: 11.4698
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG093400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_127.19e-0962107550
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                          +r rr+++NRe+ArrsR+RK+ ++ eL+  ++++e  +++L+ +++
  Pavir.9NG093400.1.p  62 RRLRRRISNRESARRSRARKQRRLNELRASAAAMERRRRELAARAQ 107
                          799**************************************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.3E-458122IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.5E-560110No hitNo description
PROSITE profilePS502179.77260110IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.64E-662110No hitNo description
PROSITE patternPS0003606580IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MAFSDYYCID TDGFWAMSPP QLEFGPDPTA SPLLPTETTP AAVSSHEVEA GDAAAAGCAD  60
ERRLRRRISN RESARRSRAR KQRRLNELRA SAAAMERRRR ELAARAQAAR GRLALARLAN  120
AGLRAEAAAL SRRLAAARRA FTLGRLYHAA TITAAAGGSG SGACSHGFVD IEQTIASLIA  180
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17481RRSRARKQ
295100ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG093400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004986317.11e-38ocs element-binding factor 1
TrEMBLA0A3L6S8U65e-40A0A3L6S8U6_PANMI; Ocs element-binding factor 1-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2097457