PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG104500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HSF
Protein Properties Length: 374aa    MW: 41396 Da    PI: 4.6655
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG104500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.41.1e-33601502101
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d+++++++sw   g+sfvv+d + fa+ +Lp+yFkhsnf+SFvRQLn+YgF+kv+  +         weF+++ F ++k+
  Pavir.9NG104500.1.p  60 FLTKTYDVVDDPNTDTVVSWGFAGHSFVVWDANAFANVILPRYFKHSNFSSFVRQLNTYGFRKVDPYR---------WEFANEGFLRDKR 140
                          9****************************************************************998.........************* PP

                          XXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkk 101
                          ell++ikr++
  Pavir.9NG104500.1.p 141 ELLKTIKRRR 150
                          ********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004158.0E-5456149IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.107.4E-3656149IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.08E-3256149IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.4E-196083IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.6E-3060149IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-1998110IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434099123IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.4E-19111123IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MDPFRGIVKE EEFDFDFDFT GASAVGAPAA GAAASSSWAV GVPEQPRPME GLGEVGPTPF  60
LTKTYDVVDD PNTDTVVSWG FAGHSFVVWD ANAFANVILP RYFKHSNFSS FVRQLNTYGF  120
RKVDPYRWEF ANEGFLRDKR ELLKTIKRRR PPSSPSAQQG QAQPPAACLE VGQFGLEGEV  180
HRLQRDKGIL LAEVVKLRQE QQATRAQMQA MEERITTAEQ KQQQMTVFLA RAMKNPSFLR  240
MLVDHQGLAD RRRELEDALS KKRRRPIEYL PRDDESSSSA AAEAAVGDYI SVLPVGVNGV  300
AEPDDDEGRR DHRGGGGEDT EIFWMELLNL SLEEKHREGG GAGADNDVDD DDVDVLVQSI  360
YHLNPNPGSP SGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-245114917129Heat shock factor protein 1
5d5v_B5e-245114917129Heat shock factor protein 1
5d5v_D5e-245114917129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142148LKTIKRR
2250264RRRELEDALSKKRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.171540.0stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG104500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0858160.0BT085816.2 Zea mays full-length cDNA clone ZM_BFc0067H20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795376.10.0heat stress transcription factor A-2a-like
RefseqXP_025817582.10.0heat stress transcription factor A-2a-like
SwissprotQ84MN71e-152HFA2A_ORYSJ; Heat stress transcription factor A-2a
TrEMBLA0A2T7C1480.0A0A2T7C148_9POAL; Uncharacterized protein
STRINGPavir.J00582.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.12e-75heat shock transcription factor A6B
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]
  3. Mittal D,Madhyastha DA,Grover A
    Gene expression analysis in response to low and high temperature and oxidative stresses in rice: combination of stresses evokes different transcriptional changes as against stresses applied individually.
    Plant Sci., 2012. 197: p. 102-13
    [PMID:23116677]