PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG122800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 191aa    MW: 20963.2 Da    PI: 7.8504
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG122800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26.2e-131258455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                          h  +Er+RR+++ ++f  L +++P +     kK++Ka++L  A++Y+k+Lq
  Pavir.9NG122800.1.p 12 DHILAERKRRENLSQRFIALSKIVPGL-----KKMDKASVLGDAIKYVKQLQ 58
                         5999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.332857IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-171269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-101358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-181376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.18E-131362No hitNo description
SMARTSM003538.4E-151463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MTNSMCRGIS RDHILAERKR RENLSQRFIA LSKIVPGLKK MDKASVLGDA IKYVKQLQDQ  60
VKGLEDEARR RPVEAAVLVK KSQLSADDDD GSSCDENFVG TEAAGTLPEI EARVSDRTVL  120
IRIHCENRKG VLIAALSEVE CLGLTIMNTN VLPFTTSTLD ITVMAMAGDD FCMSVKDIVK  180
KLNQAFKSSF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-14567163Transcription factor MYC2
5gnj_B2e-14567163Transcription factor MYC2
5gnj_E2e-14567163Transcription factor MYC2
5gnj_F2e-14567163Transcription factor MYC2
5gnj_G2e-14567163Transcription factor MYC2
5gnj_I2e-14567163Transcription factor MYC2
5gnj_M2e-14567163Transcription factor MYC2
5gnj_N2e-14567163Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11621ERKRRE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.105950.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG122800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0365520.0BT036552.2 Zea mays full-length cDNA clone ZM_BFb0123D23 mRNA, complete cds.
GenBankEU9565960.0EU956596.1 Zea mays clone 1567551 symbiotic ammonium transporter mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795190.11e-124transcription factor bHLH18-like
SwissprotQ9T0726e-53BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A2S3III01e-123A0A2S3III0_9POAL; Uncharacterized protein
STRINGPavir.J27306.1.p1e-128(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-55bHLH family protein