PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG122800.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 151aa    MW: 16326.7 Da    PI: 4.5788
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG122800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.30.000642183955
                         TCHHHHHHHHHHHHHHH CS
                  HLH 39 sKaeiLekAveYIksLq 55
                         +Ka++L  A++Y+k+Lq
  Pavir.9NG122800.2.p  2 DKASVLGDAIKYVKQLQ 18
                         8***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.4E-5129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-5136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MDKASVLGDA IKYVKQLQDQ VKGLEDEARR RPVEAAVLVK KSQLSADDDD GSSCDENFVG  60
TEAAGTLPEI EARVSDRTVL IRIHCENRKG VLIAALSEVE CLGLTIMNTN VLPFTTSTLD  120
ITVMAMAGDD FCMSVKDIVK KLNQAFKSSF *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.105950.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG122800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9565961e-179EU956596.1 Zea mays clone 1567551 symbiotic ammonium transporter mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795190.11e-103transcription factor bHLH18-like
TrEMBLA0A2S3III01e-102A0A2S3III0_9POAL; Uncharacterized protein
TrEMBLA0A2T7C1M31e-102A0A2T7C1M3_9POAL; Uncharacterized protein
STRINGPavir.J27306.1.p1e-105(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-36bHLH family protein