PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG129200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 535aa    MW: 61477.9 Da    PI: 7.4928
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG129200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR132.82.4e-1046105779
                 FAR1   7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevt 79 
                          A              s+   +i++r+fvCskeg+r+++++  t k++r+ra+ r gC+a+++v++++ g w+v+
  Pavir.9NG129200.1.p  46 A--------------SRIGFSIIMRRFVCSKEGFRNKKQNYnTGKRKRSRATVREGCHAMIEVTQKYCGWWVVE 105
                          3..............44444578899*********99998857788889*****************99999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.8E-846105IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MALGISSDLV DMNNNHIKEN LENSEPFVVM EFESDEAVKV FYIAYASRIG FSIIMRRFVC  60
SKEGFRNKKQ NYNTGKRKRS RATVREGCHA MIEVTQKYCG WWVVEWSFLL MKLPRHSIML  120
MPAVWALIHY IHSKSEVITL AKTSVLQENL ITMNLHLGEL GRNFKDQSAN DQERLNAENS  180
TFSYVFQVNK NDCLTHAFWA DAKVRTSSYY DFGYKLDTSF NWIAAMGSHH PTSLTTYYNE  240
AIGSAAAKIL NRCKEKLANI YSGYASFNEE FGVCINEPET TEIFESSWKK ILDKYDLDDN  300
LWLQSLYSIQ QRWVPVYFKN VFTAELSATN GPESLGSCFK KYFHKTTTLP TLWRILTKPM  360
LRIPSNMLKQ VSEIYTVTVF NIFEEEFIES LGYYVSSLNN DGPIDMHKVT KEGTGSSFTV  420
SYDATDKRAW CSCCSRDLGS CTKEAKNGFV LDECLQYSEL YRDSLRYARE GSTSGQVFTF  480
AQQTLQKREK IPHPNEDVSI RTFEQQSVLM RCKSLDSRMI LMHAAAHQPR QEGI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG129200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632988.11e-173protein FAR1-RELATED SEQUENCE 5
RefseqXP_015632989.11e-173protein FAR1-RELATED SEQUENCE 5
RefseqXP_015632990.11e-173protein FAR1-RELATED SEQUENCE 5
RefseqXP_015632991.11e-173protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A0A9BNI30.0A0A0A9BNI3_ARUDO; Uncharacterized protein
STRINGOB03G39100.11e-172(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-61FAR1-related sequence 5