PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG146600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YA
Protein Properties Length: 268aa    MW: 28302.5 Da    PI: 9.863
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG146600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.96.8e-33170226158
            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          +ep+YVNaKQy++Il+RRq+Rak+e ekk+  k+rkpylheSRh+hA+rR+Rg+gGrF
  Pavir.9NG146600.1.p 170 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-VKTRKPYLHESRHQHAMRRARGNGGRF 226
                          69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.5E-36168229IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.651169229IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.4E-28171226IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.7E-25172194IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860174194IPR018362CCAAT-binding factor, conserved site
PRINTSPR006167.7E-25203226IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MESRPDGTNL VEPRGPGAAL PSGGAAMQQP WWTSSGAGLG AVAPAVVAPG SGAGISLSSS  60
PVGSSGGAGA AKGAASDESS GDSRRSGEPK DGSAGQEKNH ATSQMPALMS EYLTPYSQLE  120
LNQSIGSAAY QYPDPYYAGM IPPYGTQALA HFQLPGLSHS RMPLPLEVSE EPVYVNAKQY  180
HGILRRRQSR AKAELEKKVV KTRKPYLHES RHQHAMRRAR GNGGRFLNTK KSDNGTPNGN  240
AEPKKGDQNS EHLRVPPDLL QLRQNEA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-22170234266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.20180.0leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG146600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795066.11e-171nuclear transcription factor Y subunit A-9-like
TrEMBLA0A2T7C2A81e-170A0A2T7C2A8_9POAL; Uncharacterized protein
STRINGPavir.Ia00780.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82053649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.11e-42nuclear factor Y, subunit A9