PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG159100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 650aa    MW: 71786.3 Da    PI: 5.955
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG159100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.31.3e-084014381954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yp+ +e+  L++++gLt +q+++WF N R +
  Pavir.9NG159100.1.p 401 FEHflHPYPKDSEKLMLSRQTGLTRSQISNWFINARVR 438
                          664559******************************88 PP
2BELL120.76.4e-39264335172
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          e+qelq+k akL+ +l+eVd++Yk+y++q+q v+ssF++vag g+akpYt++Al++iSrhFrcLkdai +qi
  Pavir.9NG159100.1.p 264 EKQELQNKMAKLMAMLDEVDRKYKHYYHQMQLVMSSFDTVAGSGAAKPYTAVALQTISRHFRCLKDAINDQI 335
                          689*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.2E-57188333IPR006563POX domain
PfamPF075268.6E-51194331IPR006563POX domain
PROSITE profilePS5007112.001379442IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-27381451IPR009057Homeodomain-like
SMARTSM003894.8E-9382446IPR001356Homeobox domain
CDDcd000863.06E-12382443No hitNo description
SuperFamilySSF466898.55E-17383448IPR009057Homeodomain-like
PfamPF059202.8E-17399438IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MATYYSSPGS ERDSQTMYST ESGNASYPMP ALGNLLYPNN ASSGPYTEFS GIIQHQQNFM  60
ELPGHPSAMS HDSSSNEATN MGTSLTDQRS FGPLKDMRNE MLMHLMDGAH NSGSDLIHND  120
AHNTGQIEFG MLNNHNSTSV PSAPGQGLSL SLNTHILAPS YPYWSAKPEL LTPNSYQGDD  180
NRMKSVQSEA SRAIRNSKYL KAAQELLDEI VSVWKSVKQK ADKGPAEAGK ADGKETEGGN  240
KSEGVSSNPQ ESGANAAAEL STAEKQELQN KMAKLMAMLD EVDRKYKHYY HQMQLVMSSF  300
DTVAGSGAAK PYTAVALQTI SRHFRCLKDA INDQIGVIRK KLGEDDNTSG KEGKLTRLRY  360
IDQQIRQQRA FQQYGMLQQN AWRPQRGLPE NSVSILRAWL FEHFLHPYPK DSEKLMLSRQ  420
TGLTRSQISN WFINARVRLW KPMIEDMYKE EVGDGELDSN SSSDNGARSK DKAPSSEEKE  480
DLKTSTSQAC QSNQLDESKA NLGGMMSLNG APAGDFHNEA NPEDSFMSLM LKAQRPGETN  540
GSSLLHHAVA HHSDESTQFM AYHLAELGRY GNNNVSLTLG LQHADNNLSS VPTTYTQPGF  600
SGVRDEDIYN ANAPLNVTST SSDYESTNQM DQQQRQRFES SPLMHDFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A6e-16388445158Homeobox protein Meis1
4xrs_B6e-16388445158Homeobox protein Meis1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.183910.0callus| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG159100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9571390.0EU957139.1 Zea mays clone 1583941 BEL1-related homeotic protein 30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792966.10.0BEL1-like homeodomain protein 7
RefseqXP_025792967.10.0BEL1-like homeodomain protein 7
TrEMBLA0A2T7C2M00.0A0A2T7C2M0_9POAL; Uncharacterized protein
STRINGPavir.Ia00978.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-118BEL1-like homeodomain 6