PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG161800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 262aa    MW: 29353 Da    PI: 6.0606
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG161800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.94.1e-091792122255
                          SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
             Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                           +yps+ e++ LA+++gL+ +q+ +WF N+R ++
  Pavir.9NG161800.1.p 179 WPYPSELEKAALAESTGLDAKQINNWFINQRKRH 212
                          69*****************************885 PP
2ELK361.5e-12132153122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELK++Ll+KYsgyL++L++E+s
  Pavir.9NG161800.1.p 132 ELKNRLLNKYSGYLSNLWKELS 153
                          9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.6E-11138IPR005540KNOX1
PfamPF037902.2E-16136IPR005540KNOX1
SMARTSM012561.6E-274293IPR005541KNOX2
PfamPF037915.5E-224891IPR005541KNOX2
SMARTSM011881.7E-6132153IPR005539ELK domain
PfamPF037891.4E-9132153IPR005539ELK domain
PROSITE profilePS5121310.493132152IPR005539ELK domain
PROSITE profilePS5007112.471152215IPR001356Homeobox domain
SuperFamilySSF466892.22E-18154223IPR009057Homeodomain-like
SMARTSM003891.5E-11154219IPR001356Homeobox domain
CDDcd000869.64E-13155215No hitNo description
Gene3DG3DSA:1.10.10.609.1E-26157216IPR009057Homeodomain-like
PfamPF059205.1E-16172211IPR008422Homeobox KN domain
PROSITE patternPS000270190213IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MSHPLYPALL RAFIDCRKVG APPEVVGRLS ALAGEVEMNS GDVQEQPADP ELDQFMEIYC  60
NMLVRYRQEL TRPIEEADEF FRSMEAQIDS FSLDDNGYEG GGSSSDDEQE TVDLVGLPVA  120
ETTGSPSAED KELKNRLLNK YSGYLSNLWK ELSRKKKKGK LPRDARQKLL HWWQLHYRWP  180
YPSELEKAAL AESTGLDAKQ INNWFINQRK RHWKPAPPAM VLATDYRLRP YGGGASSSSG  240
SAALRMEGQH FAGGSSYPRG P*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG161800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0406220.0BT040622.1 Zea mays full-length cDNA clone ZM_BFc0104L02 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792019.11e-172homeobox protein knotted-1-like 4
SwissprotQ75LX71e-130KNOS4_ORYSJ; Homeobox protein knotted-1-like 4
TrEMBLA0A2S3IJG11e-171A0A2S3IJG1_9POAL; Uncharacterized protein
TrEMBLA0A2T7C3081e-171A0A2T7C308_9POAL; Uncharacterized protein
STRINGPavir.Ia01001.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47462950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.17e-75KNOTTED-like from Arabidopsis thaliana