PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9NG179100.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 1068aa MW: 115756 Da PI: 5.3099

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG179100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	100.6	1.6e-31	86	189	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..............tekerrtraetrtgCkaklkvkkekdgkwe 77 fYn YA++vGFs+r+s +++s+r+g++++r+fvC keg+r+ + k+ + + rrtra+tr+gCka+++vkk+++g+w Pavir.9NG179100.1.p 86 FYNVYAHRVGFSTRISVMHRSRRDGSVMSRQFVCAKEGFRTYRGKNevaradaadagdedSARGRRTRAVTRVGCKAMIRVKKQDNGRWT 175 ********************************************************999999********************** PP FAR1 78 vtkleleHnHelap 91 vtkle+ HnH+l+p Pavir.9NG179100.1.p 176 VTKLETAHNHPLVP 189 *********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-29	86	189	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.4E-21	305	396	IPR018289	MULE transposase domain
Pfam	PF04434	4.9E-10	573	618	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.942	583	621	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.5E-8	596	623	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1068 aa Download sequence Send to blast
MERGAGSEQG SPESEMGDGD NDSVGYGAEM EVDAGSGSAG ASAPASSASA SACASASAYA 60 ARAGAYDGVD PFEGMEFDDE EDAWTFYNVY AHRVGFSTRI SVMHRSRRDG SVMSRQFVCA 120 KEGFRTYRGK NEVARADAAD AGDEDSARGR RTRAVTRVGC KAMIRVKKQD NGRWTVTKLE 180 TAHNHPLVPA NQAHCLRPHK PLSECGKQRP FGGHRNGGTL LSIEPPQTPL TPSVPQTSIA 240 QVVPQYVSDG IGNGTRVILD YVKRMQAEDP AFFYAMQFVE GRPVGNVFWA DARARAAYKD 300 FGDAIVLDDY FKRSKHEFPL VAFTGVNHHC QPVLFGCAII ADNNEASFVW LFETFLLAMS 360 GQHPASLTME HDNALQSAAV KVFPLTRFQI CKWHIINEAR DKLSHLLNVF PSFHEDFINC 420 INMSETIDEF EANWKALISK VSSQNTEWLN SMYNCRHKWV PVYLRDTFFG DVALKQQCAT 480 RSSLFEGYIS AKTDSQSFIQ QYEKALDCCY EKEVKEEFET KYSPPDIKTS SPIERQGAES 540 YTRSMFLKFQ QELIDASVYT AEMVKEEGSV STYVVTKSEG SEKAVTVQFS SSGSSATCSC 600 RMFEYFGIVC RHILAVFGVR GVSVLPSQYF VKRWTKNAMD RSSSKKVDAV SRVEEPKEEQ 660 RSSAEDDEQS PTWRYNSLCR EALRYAEEGA SSLEVYIVAM QALQEAANRV NMAKRGIGQV 720 APLAVMPIAA QPPESFGKIQ EISSNKQKKR KRNSNSSREN ATSNQLMYVQ QPVNFLFVAS 780 GSSSALQGPS QLVAAAPISL STQYGQTSGV NNSVDDNIPP ASVVDKFSGL PDRNASASAP 840 SLGNLQGGET NSTGAASQIK EYHELSQANG NRGCSVNTLN SSAAPQLVTV PIGLCLPSMD 900 GSNISAAGMN SVNSGDTNSN GKLSLGLHQP ESSSQTKTLE SIDPRANLEG SSIRAAAIAA 960 GARIASPSDA ASIIKAAQSK GAIQIRPGEN LPNYLKPLAP KPLSSLPPVN TPHSVHAIPG 1020 QHSFGDSAAA KDAIFGSSDG SDDDEYDDDD DTDDEDEGLT GDDAEHE*

Sequence ? help Back to Top

Protein Sequence Length: 1068 aa Download sequence Send to blast

MERGAGSEQG SPESEMGDGD NDSVGYGAEM EVDAGSGSAG ASAPASSASA SACASASAYA  60
ARAGAYDGVD PFEGMEFDDE EDAWTFYNVY AHRVGFSTRI SVMHRSRRDG SVMSRQFVCA  120
KEGFRTYRGK NEVARADAAD AGDEDSARGR RTRAVTRVGC KAMIRVKKQD NGRWTVTKLE  180
TAHNHPLVPA NQAHCLRPHK PLSECGKQRP FGGHRNGGTL LSIEPPQTPL TPSVPQTSIA  240
QVVPQYVSDG IGNGTRVILD YVKRMQAEDP AFFYAMQFVE GRPVGNVFWA DARARAAYKD  300
FGDAIVLDDY FKRSKHEFPL VAFTGVNHHC QPVLFGCAII ADNNEASFVW LFETFLLAMS  360
GQHPASLTME HDNALQSAAV KVFPLTRFQI CKWHIINEAR DKLSHLLNVF PSFHEDFINC  420
INMSETIDEF EANWKALISK VSSQNTEWLN SMYNCRHKWV PVYLRDTFFG DVALKQQCAT  480
RSSLFEGYIS AKTDSQSFIQ QYEKALDCCY EKEVKEEFET KYSPPDIKTS SPIERQGAES  540
YTRSMFLKFQ QELIDASVYT AEMVKEEGSV STYVVTKSEG SEKAVTVQFS SSGSSATCSC  600
RMFEYFGIVC RHILAVFGVR GVSVLPSQYF VKRWTKNAMD RSSSKKVDAV SRVEEPKEEQ  660
RSSAEDDEQS PTWRYNSLCR EALRYAEEGA SSLEVYIVAM QALQEAANRV NMAKRGIGQV  720
APLAVMPIAA QPPESFGKIQ EISSNKQKKR KRNSNSSREN ATSNQLMYVQ QPVNFLFVAS  780
GSSSALQGPS QLVAAAPISL STQYGQTSGV NNSVDDNIPP ASVVDKFSGL PDRNASASAP  840
SLGNLQGGET NSTGAASQIK EYHELSQANG NRGCSVNTLN SSAAPQLVTV PIGLCLPSMD  900
GSNISAAGMN SVNSGDTNSN GKLSLGLHQP ESSSQTKTLE SIDPRANLEG SSIRAAAIAA  960
GARIASPSDA ASIIKAAQSK GAIQIRPGEN LPNYLKPLAP KPLSSLPPVN TPHSVHAIPG  1020
QHSFGDSAAA KDAIFGSSDG SDDDEYDDDD DTDDEDEGLT GDDAEHE*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.7750	0.0	callus\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG179100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF466201	0.0	AF466201.1 Sorghum bicolor clone SBTXS_0032H17 putative cytochrome P450-like protein, putative DNA-binding protein homolog, TATA-binding protein, hypothetical protein M3E9.200, 3-glucanase, K-exchanger-like protein, small heat shock-like protein, methionine synthase protein, putative far-red impaired response protein, and putative vegetative storage protein genes, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025794565.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A2T8I184	0.0	A0A2T8I184_9POAL; Uncharacterized protein
STRING	Pavir.Ia01109.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-165	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.9NG179100.1.p