PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG180100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 416aa    MW: 45065.5 Da    PI: 4.2164
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG180100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM63.47e-20111461128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknr.atksgyWkat 86 
                          lppG+ FhP d+el+ ++L + v+g++  ++   vi++    ++ Pw+L  ++  a+++e yfF++++  +++  r+ r  +  ++W ++
  Pavir.9NG180100.1.p  11 LPPGLNFHPDDDELIEFFLLPTVRGEPawFPGVIVIDDDTAANTLPWKLLeRHGLAGDDEAYFFVRTKDGKKEAARQDRyCAGGARWVSQ 100
                          79*************************886666789999**********7344456888**********999*******6666777*976 PP

                  NAM  87 gkdkevlsk....kgelvglkktLvfykgrapk...gektdWvmheyrl 128
                              +v+ +    +++  + +  L +  gr ++   g +t Wvmhey+l
  Pavir.9NG180100.1.p 101 R---PVFGAscigGERIEWRRINLNLQMGRGKSsggGGSTGWVMHEYTL 146
                          5...55554455344555666678888654433112669********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-255161IPR003441NAC domain
PROSITE profilePS5100526.25811162IPR003441NAC domain
PfamPF023657.7E-1212146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MSTKAATAIG LPPGLNFHPD DDELIEFFLL PTVRGEPAWF PGVIVIDDDT AANTLPWKLL  60
ERHGLAGDDE AYFFVRTKDG KKEAARQDRY CAGGARWVSQ RPVFGASCIG GERIEWRRIN  120
LNLQMGRGKS SGGGGSTGWV MHEYTLTEPA CPSLKICHVS FSGHGKGRKR VPDEKYSDCC  180
QQPTEPASKR ARVAAANSGS STCVTCVYGS TVPTISDSNV AHASAGQQEH SPSPFPIDQG  240
ISAMAYQQQP LPDDNNAADS SSGICGYDYD PAQVTDEQIL EWASSFLADD ADPTAEQHKI  300
DDEQLMIQET VAAGAAKSSD GISPSNQQQQ LDSVPSMEVE ERQEIQEDQL QLVQSCTTGS  360
FCPFEESAGA DQLYLEQGVP TTEQHLPAEY PNGGDDQENL EFWRSIGFDI ESTVF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG180100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3L6QIZ70.0A0A3L6QIZ7_PANMI; Uncharacterized protein
STRINGPavir.Ia01183.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP8717946
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17260.15e-10NAC domain containing protein 86