PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG180300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 209aa    MW: 23417.9 Da    PI: 4.7843
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG180300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like64.51.9e-203388355
              G2-like  3 rlrWtpeLHerFveaveqLGGsekAtP...ktilelmkvkgLtlehvkSHLQkYRl 55
                          l+W+ +LH  Fv+av+  GG+++A P   k+ +e+m+v gLt++++kSHLQ+YR 
  Pavir.9NG180300.1.p 33 YLQWSDDLHMIFVKAVAYQGGPHEAKPtalKETMEAMGVRGLTIQNIKSHLQRYRE 88
                         589************************66666788899*****************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.58E-102890IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.1E-193089IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-153189IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MSTNKPTQKN DVTIMSSMLA CRIICAMQPT KSYLQWSDDL HMIFVKAVAY QGGPHEAKPT  60
ALKETMEAMG VRGLTIQNIK SHLQRYREKC ELGAEAPAVK VPGTTSLCKE ALNQASKILM  120
DTDAVMLEME IVNNFLMDDI EMVDNNFSVD RVQMMEKELM DAIQVVYSHN DNEANFSCPQ  180
LIEHNSQHPQ TVIDEYIADL ANYAFGHL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG180300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797593.17e-99myb family transcription factor PHL12-like
RefseqXP_025797594.17e-99myb family transcription factor PHL12-like
TrEMBLA0A1E5WBP81e-104A0A1E5WBP8_9POAL; Uncharacterized protein
STRINGSb01g013080.16e-86(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154991216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12730.13e-15G2-like family protein