PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG180300.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 182aa    MW: 20291.4 Da    PI: 5.2395
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG180300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like64.91.5e-203388355
              G2-like  3 rlrWtpeLHerFveaveqLGGsekAtP...ktilelmkvkgLtlehvkSHLQkYRl 55
                          l+W+ +LH  Fv+av+  GG+++A P   k+ +e+m+v gLt++++kSHLQ+YR 
  Pavir.9NG180300.2.p 33 YLQWSDDLHMIFVKAVAYQGGPHEAKPtalKETMEAMGVRGLTIQNIKSHLQRYRE 88
                         589************************66666788899*****************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.69E-102890IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.9E-193089IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-153189IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MSTNKPTQKN DVTIMSSMLA CRIICAMQPT KSYLQWSDDL HMIFVKAVAY QGGPHEAKPT  60
ALKETMEAMG VRGLTIQNIK SHLQRYREKC ELGAEAPAVK VPGTTSLCKE ALNQASKILM  120
DTDAVMLEME IVNNFLMDDI EMVDNNFSVD RVQLIEHNSQ HPQTVIDEYI ADLANYAFGH  180
L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG180300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797593.12e-98myb family transcription factor PHL12-like
RefseqXP_025797594.12e-98myb family transcription factor PHL12-like
TrEMBLA0A3L6SBR91e-105A0A3L6SBR9_PANMI; Uncharacterized protein
STRINGSb01g013080.17e-79(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12730.12e-15G2-like family protein