PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.9NG181900.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

YABBY

Protein Properties

Length: 192aa MW: 21417.4 Da PI: 8.9836

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.9NG181900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	238.6	1.3e-73	6	165	4	170
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesas 93 e+vCyv+CnfCntilavsvPs+s++++vtvrCGhCtsllsvnl+ l++++h + ++e+ kv++ ++++n++++ +s Pavir.9NG181900.1.p 6 APPLEHVCYVHCNFCNTILAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLIPSLPVQNH-----SQLVQENFKVHNISFTENYSEYAPTS 90 56679***************************************************9.....566999**************** PP YABBY 94 tsvssekl..senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ ++ ++ ++ +++++ + +r PekrqrvPsaynrfikeei+rikasnP ishreafs+aaknWahfP+ihfgl Pavir.9NG181900.1.p 91 SKYRMPMMfsTKGDQDHMLH----VRAPEKRQRVPSAYNRFIKEEIRRIKASNPAISHREAFSTAAKNWAHFPNIHFGL 165 99998744445555555....89**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.0E-70	9	165	IPR006780	YABBY protein
SuperFamily	SSF47095	2.09E-7	109	159	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.1E-4	111	159	IPR009071	High mobility group box domain
CDD	cd00084	4.17E-4	119	155	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MSAQIAPPLE HVCYVHCNFC NTILAVSVPS NSMLNIVTVR CGHCTSLLSV NLRGLIPSLP 60 VQNHSQLVQE NFKVHNISFT ENYSEYAPTS SKYRMPMMFS TKGDQDHMLH VRAPEKRQRV 120 PSAYNRFIKE EIRRIKASNP AISHREAFST AAKNWAHFPN IHFGLGTHES SKNLDEAIGA 180 AGGPQKVQDL Y*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.5951	0.0	callus

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in leaf blades, leaf sheaths and flowers. {ECO:0000269\|PubMed:17216490}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.9NG181900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025795818.1	1e-130	protein YABBY 2-like isoform X2
Swissprot	Q10FZ7	1e-107	YAB2_ORYSJ; Protein YABBY 2
TrEMBL	A0A2T7C330	1e-130	A0A2T7C330_9POAL; Uncharacterized protein
STRING	Pavir.Ia01130.1.p	1e-138	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1394	37	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	3e-56	YABBY family protein

Link Out ? help Back to Top
Phytozome	Pavir.9NG181900.1.p