PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG191700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 129aa    MW: 14514.2 Da    PI: 6.7777
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG191700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR134.66.2e-1162124171
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkke 71 
                          ++Yn+YA++vGF+vr+sk+k++  +g+  ++++v  ++g+re+++++       ++ t tgC+a+++ + +
  Pavir.9NG191700.1.p  62 EMYNTYAERVGFNVRRSKTKHR-LDGSLRQKHLVYCCQGYRENDSSQ-------KNITMTGCDARVQFSIS 124
                          58***************98876.999999999999999999998766.......8899*******998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.6E-862124IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MEDPHSLEID VGGGRPEEEQ QIAQVGSVEN KVPNEKVLDK SKQNLTTPEV GMSSESEKKA  60
YEMYNTYAER VGFNVRRSKT KHRLDGSLRQ KHLVYCCQGY RENDSSQKNI TMTGCDARVQ  120
FSISREGL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.9NG191700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020406333.12e-32protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A3L6Q9Q91e-56A0A3L6Q9Q9_PANMI; Uncharacterized protein
STRINGSb04g005390.15e-36(Sorghum bicolor)
STRINGSb06g025940.16e-38(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1508638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80010.11e-09FAR1-related sequence 8